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1. PughLabReadme PughLabReadme Public

   Documentation of best practices, coding tips, and ongoing projects developed by the Pugh Lab.

   3

2. cbioportal cbioportal Public

   Forked from cBioPortal/cbioportal

   cBioPortal for Cancer Genomics

   Java 1 2

3. ConsensusCruncher ConsensusCruncher Public

   ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amalgamate reads derived from the same DNA template into a cons…

   Jupyter Notebook 22 9

4. VisCap VisCap Public

   VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number variants (CNVs) from targeted next-generation sequencing data.…

   R 23 12

5. bamgineer bamgineer Public

   Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets

   Python 38 14

6. crescent crescent Public

   The CanceR Single Cell ExpressioN Toolkit one-line-command applications.

   R 9 4