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link out to Orphanet from Protege currently goes to a 404 page #1192

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nicolevasilevsky opened this issue Feb 22, 2024 · 4 comments · Fixed by #1193
Closed

link out to Orphanet from Protege currently goes to a 404 page #1192

nicolevasilevsky opened this issue Feb 22, 2024 · 4 comments · Fixed by #1193

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@nicolevasilevsky
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@gouttegd
In Mondo, the link outs from Orphanet IDs are now going to a 404 page (see example: Orphanet:79240 redirects to https://www.orpha.net/consor/www/cgi-bin/OC_Exp.php?Expert=79240). I'm guessing something changed on the Orphanet website.

Thank you for looking into this!

cc @sabrinatoro @twhetzel
gouttegd added a commit that referenced this issue Feb 22, 2024
@gouttegd
Fix the Orphanet link extractor.
f7881e1 
It seems the Orphanet website no longer serves resources of the form
`/consor/www/cgi-bin/OC_Exp.php`, only `/consor/cgi-bin/OC_Exp.php`, so
we update the link extractor accordingly.

closes #1192
@gouttegd gouttegd mentioned this issue Feb 22, 2024
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@gouttegd
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What seems to have changed is that they moved their cgi-bin directory one directory upward, so the expected URLs should now be https://www.orpha.net/consor/cgi-bin/OC_Exp.php?Expert=79240 instead of https://www.orpha.net/consor/www/cgi-bin/OC_Exp.php?Expert=79240 (note the missing www/ in the first URL).

@nicolevasilevsky
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thanks for your quick reply @gouttegd! Do we have to wait for the next Protege release to see this fix?

@gouttegd
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Yes, sorry. It’s a code change, not something that can updated on the fly on an existing Protégé installation.

@nicolevasilevsky
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All good @gouttegd! I'm super grateful for you and your contributions to Protege. 💟

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Fix the Orphanet link extractor. protegeproject/protege
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@nicolevasilevsky @gouttegd