Better parsing exceptions

[nevrome]

There are some trident error messages that are not well rendered on the command line. This PR is an attempt to improve them. Here's some examples of what I did so far:

---

-f "<<>" (or other broken CLI input that goes through parsec)

option -f: PoseidonPoseidonEntityParsingException "(line 1, column 2):\nunexpected \"<\""

Now:

option -f: Error when parsing the forge selection (either -f or --forgeFile):
unexpected "<"

And with --forgeFile, where the file contains only <<>

[Error]   Error when parsing the forge selection (either -f or --forgeFile):
unexpected "<"

---

YAML file with broken orcid field (or other yml fields)

[Warning] Could not parse YAML file 2010_RasmussenNature/POSEIDON.yml: AesonException "Error in $.contributor[0].orcid: (line 1, column 5):\nunexpected \".\""

[Warning] Could not parse YAML file 2010_RasmussenNature/POSEIDON.yml:
Aeson exception:
Error in $.contributor[0].orcid:
unexpected "."

With a broken date in lastModified:

[Warning] Could not parse YAML file /home/schmid/agora/community-archive/2010_RasmussenNature/POSEIDON.yml: AesonException "Error in $.lastModified: could not parse date: Failed reading: date must be of form [+,-]YYYY-MM-DD"

[Warning] Could not parse YAML file 2010_RasmussenNature/POSEIDON.yml:
Aeson exception:
Error in $.lastModified: could not parse date: Failed reading: date must be of form [+,-]YYYY-MM-DD

[codecov]

Codecov Report

Attention: Patch coverage is 27.77778% with 26 lines in your changes missing coverage. Please review.

Please upload report for BASE (master@e8ff841). Learn more about missing BASE report.

Files	Patch %	Lines
src/Poseidon/Utils.hs	20.83%	14 Missing and 5 partials ⚠️
src/Poseidon/EntityTypes.hs	25.00%	1 Missing and 2 partials ⚠️
src/Poseidon/BibFile.hs	0.00%	1 Missing ⚠️
src/Poseidon/CLI/Forge.hs	50.00%	1 Missing ⚠️
src/Poseidon/CLI/Genoconvert.hs	50.00%	1 Missing ⚠️
src/Poseidon/Package.hs	50.00%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff            @@
##             master     #299   +/-   ##
=========================================
  Coverage          ?   68.37%           
=========================================
  Files             ?       26           
  Lines             ?     3554           
  Branches          ?      403           
=========================================
  Hits              ?     2430           
  Misses            ?      721           
  Partials          ?      403           

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[nevrome]

I decided to use the opportunity to also suggest a solution for #244. I think the error shortening mechanism is only really relevant for the excessive PoseidonGenotypeExceptionForward. So I made it a feature of only this exception to include an ErrorLength to which its text should be truncated. This abolishes the general error truncation and makes it a much more specific feature.

Most importantly it now also covers warnings:

[stschiff]

Very nice, looking forward to it.

[nevrome]

I lost track of this PR. But it looks like the changes I applied so far are meaningful and complete. Maybe you could have a look, @stschiff. It's time for a Poseidon release with the amazing --ordered flag!

[stschiff]

Yes, true, will try to get this finished before I go on vacation, similarly to #304.

[stschiff]

Ok, looks great. Love the showParsecErr trick.

My own preference is not to make definitions like data ErrorLength = CharInf | CharCount Int deriving Show but instead use Maybe Int for this, but we had this discussion before, and I guess it comes down to personal coding style. My argument is that something like CharInf, while seemingly adding semantic interpretability, forces me to not only look up the function definitions where this is used, but also the datatype definition. With Nothing on the other hand, I can just look up the function definition to understand its semantics. Anyway, totally fine like you have it now.

I have not tested this PR at all, and don't have time before vacation for this, so if you've tested things, then I certainly approve merging this in.