[TST] Add dummy dataset for pytest/local testing

[jdkent]

This pull request includes:

• a clumsy attempt to generate small images and other necessary files for "quick" local testing of code
  • (eventually could be useful for creating more unittests)
• a test of the entire workflow using the small images
• running pytest on circleci
• combining coverage from pytest and ds003

[pep8speaks]

Hello @jdkent, Thank you for updating!

Cheers! There are no style issues detected in this Pull Request. 🍻 To test for issues locally, pip install flake8 and then run flake8 fitlins.

Comment last updated at 2020-11-19 21:52:51 UTC

[effigies]

Can we update coverage at this point? Would you mind making a new branch with this where we use latset?

[jdkent]

I think I need help to determine how to properly persist_to_workspace and attach_workspace, what I thought should work does not appear to (in the upload_coverage job).

[effigies]

I would just upload coverage separately in each job. Codecov is fine receiving multiple reports.

[codecov-io]

Codecov Report

Merging #262 (9b1a975) into master (23c081a) will increase coverage by 6.19%.
The diff coverage is 96.81%.

@@            Coverage Diff             @@
##           master     #262      +/-   ##
==========================================
+ Coverage   75.16%   81.35%   +6.19%     
==========================================
  Files          21       23       +2     
  Lines        1506     1459      -47     
  Branches      263      227      -36     
==========================================
+ Hits         1132     1187      +55     
+ Misses        261      244      -17     
+ Partials      113       28      -85     

Flag	Coverage Δ
afni	?
ds003	60.59% <0.00%> (?)
nistats	?
pytest	67.37% <96.81%> (+54.75%)	⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
fitlins/interfaces/bids.py	81.40% <ø> (+7.71%)	⬆️
fitlins/generate_dset.py	96.34% <96.34%> (ø)
fitlins/conftest.py	100.00% <100.00%> (ø)
fitlins/workflows/tests/test_base.py	100.00% <100.00%> (ø)
fitlins/interfaces/afni.py
fitlins/cli/run.py	83.84% <0.00%> (+1.01%)	⬆️
fitlins/interfaces/visualizations.py	65.38% <0.00%> (+3.84%)	⬆️
... and 7 more

---

Continue to review full report at Codecov.

Legend - Click here to learn more
Δ = absolute <relative> (impact), ø = not affected, ? = missing data
Powered by Codecov. Last update 23c081a...f608187. Read the comment docs.

[effigies]

Sorry, I should have noted that this was bound to conflict with the big AFNI PR. Care to merge/rebase master?