DOCKER: Set crashfile format to text in Docker images

poldracklab · Apr 6, 2020 · bf2cfd6 · bf2cfd6
1 parent f4abbe0
commit bf2cfd6
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/.neurodocker.json b/.neurodocker.json
@@ -83,7 +83,7 @@
     ],
     [
       "run",
-      "echo \"$VERSION\" > /src/fitlins/VERSION"
+      "echo \"$VERSION\" > /src/fitlins/VERSION && sed -i -e 's/crashfile_format = pklz/crashfile_format = txt' /src/fitlins/fitlins/data/nipype.cfg"
     ],
     [
       "miniconda",

diff --git a/Dockerfile b/Dockerfile
@@ -1,6 +1,6 @@
 # Your version: 0.6.0+5.g74cb187.dirty Latest version: 0.6.0
 # Generated by Neurodocker version 0.6.0+5.g74cb187.dirty
-# Timestamp: 2020-03-30 19:14:46 UTC
+# Timestamp: 2020-04-06 16:54:58 UTC
 # 
 # Thank you for using Neurodocker. If you discover any issues
 # or ways to improve this software, please submit an issue or
@@ -97,7 +97,7 @@ USER neuro
 
 ARG VERSION
 
-RUN echo "$VERSION" > /src/fitlins/VERSION
+RUN echo "$VERSION" > /src/fitlins/VERSION && sed -i -e 's/crashfile_format = pklz/crashfile_format = txt' /src/fitlins/fitlins/data/nipype.cfg
 
 RUN bash -c "source activate neuro \
     &&   pip install --no-cache-dir -r \
@@ -208,7 +208,7 @@ RUN echo '{ \
     \n    ], \
     \n    [ \
     \n      "run", \
-    \n      "echo \"$VERSION\" > /src/fitlins/VERSION" \
+    \n      "echo \"$VERSION\" > /src/fitlins/VERSION && sed -i -e '"'"'s/crashfile_format = pklz/crashfile_format = txt'"'"' /src/fitlins/fitlins/data/nipype.cfg" \
     \n    ], \
     \n    [ \
     \n      "miniconda", \
-Original file line number
+Diff line change
@@ Expand Up / @@ -83,7 +83,7 @@ @@
         ],
         [
           "run",
-          "echo \"$VERSION\" > /src/fitlins/VERSION"
+          "echo \"$VERSION\" > /src/fitlins/VERSION && sed -i -e 's/crashfile_format = pklz/crashfile_format = txt' /src/fitlins/fitlins/data/nipype.cfg"
         ],
         [
           "miniconda",
@@ Expand Down @@