Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

fix(rust, python): fix freeze/stall when writing more than 2^31 string values to parquet #5366

Merged
merged 3 commits into from
Nov 6, 2022
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 3 additions & 3 deletions Cargo.toml
Original file line number Diff line number Diff line change
Expand Up @@ -32,10 +32,10 @@ bitflags = "1.3"
[workspace.dependencies.arrow]
package = "arrow2"
# git = "https://github.com/jorgecarleitao/arrow2"
# git = "https://github.com/ritchie46/arrow2"
# rev = "6c102a0c3e2dbeb185360dd3d5c3637b5e2028fd"
git = "https://github.com/ritchie46/arrow2"
# rev = "e106cff24dc0c8942603712d7332a97871dce44e"
# path = "../../../arrow2"
# branch = "comparison_and_validity"
branch = "2022_11_06"
version = "0.14.1"
default-features = false
features = [
Expand Down
4 changes: 1 addition & 3 deletions polars/polars-arrow/src/kernels/list.rs
Original file line number Diff line number Diff line change
Expand Up @@ -140,9 +140,7 @@ mod test {

let out = sublist_get_indexes(&arr, 1);
assert_eq!(
out.into_iter()
.map(|opt_v| opt_v.cloned())
.collect::<Vec<_>>(),
out.into_iter().collect::<Vec<_>>(),
&[None, None, None, Some(4), Some(7), Some(10)]
);
}
Expand Down
4 changes: 2 additions & 2 deletions polars/polars-arrow/src/kernels/rolling/nulls/min_max.rs
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
use arrow::bitmap::utils::{count_zeros, zip_validity};
use arrow::bitmap::utils::{count_zeros, ZipValidityIter};
use nulls;
use nulls::{rolling_apply_agg_window, RollingAggWindowNulls};

Expand All @@ -9,7 +9,7 @@ pub fn is_reverse_sorted_max_nulls<T: NativeType + PartialOrd + IsFloat>(
validity: &Bitmap,
) -> bool {
let mut current_max = None;
for opt_v in zip_validity(values.iter(), Some(validity.iter())) {
for opt_v in ZipValidityIter::new(values.iter(), validity.iter()) {
match (current_max, opt_v) {
// do nothing
(None, None) => {}
Expand Down
11 changes: 9 additions & 2 deletions polars/polars-arrow/src/trusted_len/mod.rs
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ mod rev;
use std::iter::Scan;
use std::slice::Iter;

use arrow::bitmap::utils::{BitmapIter, ZipValidity};
use arrow::bitmap::utils::{BitmapIter, ZipValidity, ZipValidityIter};
pub use push_unchecked::*;
pub use rev::FromIteratorReversed;

Expand Down Expand Up @@ -66,7 +66,14 @@ unsafe impl<I: Iterator<Item = J>, J> TrustedLen for TrustMyLength<I, J> {}
unsafe impl<T> TrustedLen for std::ops::Range<T> where std::ops::Range<T>: Iterator {}
unsafe impl TrustedLen for arrow::array::Utf8ValuesIter<'_, i64> {}
unsafe impl TrustedLen for arrow::array::BinaryValueIter<'_, i64> {}
unsafe impl<T, I: TrustedLen + Iterator<Item = T>> TrustedLen for ZipValidity<'_, T, I> {}
unsafe impl<T, I: TrustedLen + Iterator<Item = T>, V: TrustedLen + Iterator<Item = bool>> TrustedLen
for ZipValidityIter<T, I, V>
{
}
unsafe impl<T, I: TrustedLen + Iterator<Item = T>, V: TrustedLen + Iterator<Item = bool>> TrustedLen
for ZipValidity<T, I, V>
{
}
unsafe impl TrustedLen for BitmapIter<'_> {}
unsafe impl<A: TrustedLen> TrustedLen for std::iter::StepBy<A> {}

Expand Down
42 changes: 30 additions & 12 deletions polars/polars-core/src/chunked_array/iterator/mod.rs
Original file line number Diff line number Diff line change
Expand Up @@ -306,18 +306,36 @@ impl<'a> IntoIterator for &'a ListChunked {
fn into_iter(self) -> Self::IntoIter {
let dtype = self.inner_dtype();

// we know that we only iterate over length == self.len()
unsafe {
Box::new(
self.downcast_iter()
.flat_map(|arr| arr.iter())
.trust_my_length(self.len())
.map(move |arr| {
arr.map(|arr| {
Series::from_chunks_and_dtype_unchecked("", vec![arr], &dtype)
})
}),
)
if self.null_count() == 0 {
// we know that we only iterate over length == self.len()
unsafe {
Box::new(
self.downcast_iter()
.flat_map(|arr| arr.iter().unwrap_required())
.trust_my_length(self.len())
.map(move |arr| {
Some(Series::from_chunks_and_dtype_unchecked(
"",
vec![arr],
&dtype,
))
}),
)
}
} else {
// we know that we only iterate over length == self.len()
unsafe {
Box::new(
self.downcast_iter()
.flat_map(|arr| arr.iter())
.trust_my_length(self.len())
.map(move |arr| {
arr.map(|arr| {
Series::from_chunks_and_dtype_unchecked("", vec![arr], &dtype)
})
}),
)
}
}
}
}
Expand Down
2 changes: 1 addition & 1 deletion polars/polars-core/src/chunked_array/ops/apply.rs
Original file line number Diff line number Diff line change
Expand Up @@ -652,7 +652,7 @@ impl<'a> ChunkApply<'a, Series, Series> for ListChunked {
});
f(x)
});
let len = values.len();
let len = array.len();

// we know the iterators len
unsafe {
Expand Down
31 changes: 22 additions & 9 deletions polars/polars-core/src/series/iterator.rs
Original file line number Diff line number Diff line change
Expand Up @@ -105,21 +105,34 @@ impl Series {
})
}
} else {
// TODO! null_count paths, but first exactsize iters must be implmeneted upstream
match dtype {
DataType::Utf8 => {
let arr = arr.as_any().downcast_ref::<Utf8Array<i64>>().unwrap();
Box::new(arr.iter().map(|value| match value {
Some(value) => AnyValue::Utf8(value),
None => AnyValue::Null,
})) as Box<dyn ExactSizeIterator<Item = AnyValue<'_>> + '_>
if arr.null_count() == 0 {
Box::new(arr.values_iter().map(AnyValue::Utf8))
as Box<dyn ExactSizeIterator<Item = AnyValue<'_>> + '_>
} else {
let zipvalid = arr.iter();
Box::new(zipvalid.unwrap_optional().map(|v| match v {
Some(value) => AnyValue::Utf8(value),
None => AnyValue::Null,
}))
as Box<dyn ExactSizeIterator<Item = AnyValue<'_>> + '_>
}
}
DataType::Boolean => {
let arr = arr.as_any().downcast_ref::<BooleanArray>().unwrap();
Box::new(arr.iter().map(|value| match value {
Some(value) => AnyValue::Boolean(value),
None => AnyValue::Null,
})) as Box<dyn ExactSizeIterator<Item = AnyValue<'_>> + '_>
if arr.null_count() == 0 {
Box::new(arr.values_iter().map(AnyValue::Boolean))
as Box<dyn ExactSizeIterator<Item = AnyValue<'_>> + '_>
} else {
let zipvalid = arr.iter();
Box::new(zipvalid.unwrap_optional().map(|v| match v {
Some(value) => AnyValue::Boolean(value),
None => AnyValue::Null,
}))
as Box<dyn ExactSizeIterator<Item = AnyValue<'_>> + '_>
}
}
_ => Box::new(self.iter()),
}
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -43,6 +43,7 @@ where
arr.values().iter().copied().fold_first_(min_or_max_fn)
} else {
arr.iter()
.unwrap_optional()
.map(|opt| opt.copied())
.fold_first_(|a, b| match (a, b) {
(Some(a), Some(b)) => Some(min_or_max_fn(a, b)),
Expand Down
37 changes: 23 additions & 14 deletions py-polars/Cargo.lock

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.