fix call metametamerge

pirovc · Jul 11, 2017 · 26c88d0 · 26c88d0
1 parent 8beaa6e
commit 26c88d0
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/metametamerge.sm b/scripts/metametamerge.sm
@@ -28,4 +28,4 @@ rule metametamerge:
 			detailed = "--detailed" if config["detailed"] else "",
 			verbose = "--verbose" if config["verbose"] else ""
 	conda: srcdir("../envs/metametamerge.yaml")
-	shell: "python3 {config[tool_alt_path][metametamerge]}MetaMetaMerge.py --input-files {input.tool_profiles} --database-profiles {params.db_profiles} --tool-identifier '{params.tool_identifier}' --tool-method '{params.tool_method}' --names-file {input.names} --nodes-file {input.nodes} --merged-file {input.merged} --bins {config[bins]} --cutoff {config[cutoff]} --mode '{config[mode]}' --ranks '{config[ranks]}' --output-file {output.final_profile} {params.detailed} {params.verbose} --output-parsed-profiles > {log} 2>&1"
+	shell: "{config[tool_alt_path][metametamerge]}MetaMetaMerge.py --input-files {input.tool_profiles} --database-profiles {params.db_profiles} --tool-identifier '{params.tool_identifier}' --tool-method '{params.tool_method}' --names-file {input.names} --nodes-file {input.nodes} --merged-file {input.merged} --bins {config[bins]} --cutoff {config[cutoff]} --mode '{config[mode]}' --ranks '{config[ranks]}' --output-file {output.final_profile} {params.detailed} {params.verbose} --output-parsed-profiles > {log} 2>&1"