Merge branch 'main' into renovate/matplotlib-3.x

pyproject.toml

@@ -15,7 +15,7 @@ classifiers = [
 ]
 requires-python = ">=3.10"
 dependencies = [
-  "accelerate==0.24.0",
+  "accelerate==0.24.1",
   "click==8.1.7",
   "einops==0.7.0",
   "genomepy==0.16.1",
@@ -24,13 +24,13 @@ dependencies = [
   "jupyterlab==4.0.8",
   "matplotlib==3.8.1",
   "memory-efficient-attention-pytorch==0.1.6",
-  "pandas==2.1.1",
+  "pandas==2.1.3",
   "pybedtools==0.9.1",
   "seaborn==0.13.0",
   "sourmash==4.8.4",
   "torch==2.1.0",
   "torchvision==0.16.0",
-  "wandb==0.15.12",
+  "wandb==0.16.0",
 ]
 
 [project.scripts]
@@ -167,9 +167,9 @@ dependencies = [
     "pytest==7.4.3",
     "pytest-asyncio==0.21.1",
     "pytest-cov==4.1.0",
-    "ruff==0.1.4",
-    "types-tqdm==4.66.0.2",
-    "xdoctest==1.1.1",
+    "ruff==0.1.5",
+    "types-tqdm==4.66.0.4",
+    "xdoctest==1.1.2",
 ]
 
 [tool.hatch.envs.default.scripts]