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Manually install QIIME 2 plugin
If the q2-picrust2 plugin cannot be installed with conda (likely due to mysterious incompatibility errors) then you can try installing it manually instead.
First, install QIIME 2 and activate the environment, such as qiime2-2019.10 (check the q2-picrust2 conda install instructions to see which environment is correct).
Next, install the latest version of PICRUSt2 (see installation side-bar for more install options):
conda install -c bioconda -c conda-forge picrust2
Next, download and install the q2-picrust2 plugin. Do this by first determining the latest release posted here. Download the latest release, decompress the file, and enter it on the command-line with cd.
When in the folder (which should contain setup.py) run this command to install the plugin into the current conda environment:
pip install -e .
Lastly, refresh the QIIME 2 cache:
qiime dev refresh-cache
If the installation worked you should see a description of the plugin when you run:
qiime picrust2 --help
Please first check our FAQ if you have any questions about PICRUSt2.
For other general questions and comments about PICRUSt2 please search the PICRUSt google group. If the question has not been previously answered then please make a new thread.
To report a bug or to make a feature request please make a new issue at the top of this page.