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Closes #254 Replace exprs(STUDYID, USUBJID) with get_admiral_option("subject_keys") in by_vars input of derive_vars_merged() #255

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merged 5 commits into from
Nov 14, 2024
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Closes #254 Replace exprs(STUDYID, USUBJID) with get_admiral_option("subject_keys") in by_vars input of derive_vars_merged() #255

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0e4f86f
feat: #254 Replace exprs(STUDYID, USUBJID) with get_admiral_option("s…
steventing12 Nov 4, 2024
9eb4647
Merge branch 'main' into 254-general-issue-derive_var_studyeye-accide…
manciniedoardo Nov 14, 2024
ed7047e
Merge branch 'main' into 254-general-issue-derive_var_studyeye-accide…
manciniedoardo Nov 14, 2024
a8c9b7d
#254 add get_admiral_option to list of imports
manciniedoardo Nov 14, 2024
b2d3ead
#254 fix failing lint
manciniedoardo Nov 14, 2024
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1 change: 1 addition & 0 deletions NAMESPACE
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Expand Up @@ -7,6 +7,7 @@ export(derive_var_bcvacritxfl)
export(derive_var_studyeye)
importFrom(admiral,derive_param_computed)
importFrom(admiral,derive_vars_merged)
importFrom(admiral,get_admiral_option)
importFrom(admiral,params)
importFrom(admiral,restrict_derivation)
importFrom(admiraldev,assert_character_scalar)
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1 change: 1 addition & 0 deletions R/admiralophtha-package.R
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Expand Up @@ -24,6 +24,7 @@
#' @importFrom hms as_hms
#' @importFrom lifecycle deprecate_warn deprecated deprecate_stop
#' @importFrom admiral derive_vars_merged restrict_derivation params derive_param_computed
#' get_admiral_option
#' @importFrom admiraldev assert_symbol assert_data_frame expect_dfs_equal assert_data_frame
#' assert_character_vector assert_character_scalar assert_integer_scalar
#' assert_numeric_vector assert_vars expr_c vars2chr
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2 changes: 1 addition & 1 deletion R/derive_var_studyeye.R
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Expand Up @@ -57,7 +57,7 @@ derive_var_studyeye <- function(dataset_adsl, dataset_sc, sctestcd_value = "FOCI
derive_vars_merged(
dataset_adsl,
dataset_add = dataset_sc,
by_vars = exprs(STUDYID, USUBJID),
by_vars = get_admiral_option("subject_keys"),
order = NULL,
filter_add = SCTESTCD == !!sctestcd_value,
new_vars = exprs(STUDYEYE = SCSTRESC),
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