forgot test suite

pharmaverse · Oct 6, 2023 · e8a7ef9 · e8a7ef9
1 parent e34b55b
commit e8a7ef9
Show file tree

Hide file tree

Showing 9 changed files with 35 additions and 334 deletions.
diff --git a/tests/testthat/test-compute_kidney.R b/tests/testthat/test-compute_kidney.R
@@ -100,15 +100,6 @@ test_that("compute_egfr Test 7: CKD-EPI calculated on input data", {
   )
 })
 
-<<<<<<< HEAD
-## Test 8: Deprecate wt ----
-test_that("compute_egfr Test 8: 'wt' argument deprecation warning", {
-  # expect deprecation warning
-  expect_warning(
-    compute_egfr(
-      creat = 1.09, creatu = "mg/dL", age = 55, sex = "M", wt = 90, method = "CRCL"
-    )
-=======
 ## Test 8: 'wt' argument deprecation warning ----
 test_that("compute_egfr Test 8: 'wt' argument deprecation warning", {
   # expect deprecation warning
@@ -117,6 +108,5 @@ test_that("compute_egfr Test 8: 'wt' argument deprecation warning", {
       creat = 1.09, creatu = "mg/dL", age = 55, sex = "M", wt = 90, method = "CRCL"
     ),
     class = "lifecycle_error_deprecated"
->>>>>>> b800ab103ddbf55701d4f6b2ed0080d3c3525f27
   )
 })
diff --git a/tests/testthat/test-derive_extreme_records.R b/tests/testthat/test-derive_extreme_records.R
@@ -299,76 +299,8 @@ test_that("derive_extreme_records Test 5: latest evaluable tumor assessment date
   )
 })
 
-<<<<<<< HEAD
-## Test 6: warning if filter argument is used ----
-test_that("derive_extreme_records Test 6: warning if filter argument is used", {
-  adsl <- tibble::tribble(
-    ~USUBJID,
-    "1",
-    "2",
-    "3"
-  ) %>%
-    mutate(STUDYID = "XX1234")
-
-  adrs <- tibble::tribble(
-    ~USUBJID, ~ADTC,        ~AVALC, ~PARAMCD,
-    "1",      "2020-01-02", "PR",   "OVR",
-    "1",      "2020-02-01", "CR",   "OVR",
-    "1",      "2020-03-01", "NE",   "OVR",
-    "1",      "2020-04-01", "SD",   "OVR",
-    "2",      "2021-06-15", "SD",   "OVR",
-    "2",      "2021-07-16", "SD",   "OVR",
-    "2",      "2021-09-14", "NE",   "OVR",
-    "3",      "2021-08-03", "NE",   "OVR",
-  ) %>%
-    mutate(
-      STUDYID = "XX1234",
-      ADT = ymd(ADTC)
-    ) %>%
-    select(-ADTC)
-
-  actual <- derive_extreme_records(
-    adrs,
-    dataset_ref = adsl,
-    dataset_add = adrs,
-    by_vars = exprs(USUBJID),
-    filter_add = PARAMCD == "OVR" & AVALC == "PD",
-    exist_flag = AVALC,
-    order = exprs(ADT),
-    mode = "first",
-    set_values_to = exprs(
-      PARAMCD = "PD",
-      ANL01FL = "Y",
-      ADT = ADT
-    )
-  )
-
-  expect_error(
-    derive_extreme_records(
-      adrs,
-      dataset_ref = adsl,
-      dataset_add = adrs,
-      by_vars = exprs(USUBJID),
-      filter = PARAMCD == "OVR" & AVALC == "PD",
-      exist_flag = AVALC,
-      order = exprs(ADT),
-      mode = "first",
-      set_values_to = exprs(
-        PARAMCD = "PD",
-        ANL01FL = "Y",
-        ADT = ADT
-      )
-    ),
-    class = "lifecycle_error_deprecated"
-  )
-})
-
-## Test 7: error if no input data ----
-test_that("derive_extreme_records Test 7: error if no input data", {
-=======
 ## Test 6: error if no input data ----
 test_that("derive_extreme_records Test 6: error if no input data", {
->>>>>>> b800ab103ddbf55701d4f6b2ed0080d3c3525f27
   expect_error(
     derive_extreme_records(
       set_values_to = exprs(PARAMCD = "HELLO")
@@ -382,13 +314,8 @@ test_that("derive_extreme_records Test 6: error if no input data", {
   )
 })
 
-<<<<<<< HEAD
-## Test 8: keep vars in `keep_source_vars` in the new records ----
-test_that("derive_extreme_records Test 8: keep vars in `keep_source_vars` in the new records", {
-=======
 ## Test 7: keep vars in `keep_source_vars` in the new records ----
 test_that("derive_extreme_records Test 7: keep vars in `keep_source_vars` in the new records", {
->>>>>>> b800ab103ddbf55701d4f6b2ed0080d3c3525f27
   input <- tibble::tribble(
     ~USUBJID, ~AVISITN, ~AVAL, ~LBSEQ,
     1, 1, 12, 1,
@@ -426,13 +353,8 @@ test_that("derive_extreme_records Test 7: keep vars in `keep_source_vars` in the
   )
 })
 
-<<<<<<< HEAD
-## Test 9: keep all vars in the new records when `keep_source_vars` is 'exprs(everything())' ----
-test_that("derive_extreme_records Test 9: keep all vars in the new records when `keep_source_vars` is 'exprs(everything())'", { # nolint
-=======
 ## Test 8: keep all vars in the new records when `keep_source_vars` is 'exprs(everything())' ----
 test_that("derive_extreme_records Test 8: keep all vars in the new records when `keep_source_vars` is 'exprs(everything())'", { # nolint
->>>>>>> b800ab103ddbf55701d4f6b2ed0080d3c3525f27
   input <- tibble::tribble(
     ~USUBJID, ~AVISITN, ~AVAL, ~LBSEQ,
     1, 1, 12, 1,