chore: switch to chrome from chromium, and ensure irida base url is h…

…ttp://127.0.0.1:8080

irida_import/tests/integration/bash_scripts/install_galaxy.sh

@@ -55,6 +55,7 @@ pushd galaxy/tools/irida-galaxy-importer/
 cp irida_import/config.ini.sample irida_import/config.ini
 sed -i "s/^max_waits: .*$/max_waits: 1/" irida_import/config.ini
 sed -i "s|^galaxy_url: http://localhost:8888$|galaxy_url: http://127.0.0.1:$galaxy_port|" irida_import/config.ini
+sed -i "s|^irida_url: http://localhost:8080$|irida_url: http://127.0.0.1:8080|" irida_import/config.ini
 
 echo "Configuring the tool's XML file"
 python -m irida_import.main --generate_xml

irida_import/tests/integration/irida_data_setup.py

@@ -63,6 +63,7 @@ def __init__(self, base_url, user, password, branch, db_host, db_port, repo_dir)
             '--spring.datasource.url={} '.format(self.DB_JDBC_URL) +\
             '--spring.datasource.username={} '.format(self.DB_USERNAME) +\
             '--spring.datasource.password={} '.format(self.DB_PASSWORD) +\
+            '--server.base.url=http://127.0.0.1:8080 ' +\
             '--liquibase.update.database.schema=true ' +\
             '--spring.jpa.hibernate.ddl-auto= ' +\
             '--spring.jpa.properties.hibernate.hbm2ddl.import_files= ' +\

irida_import/tests/integration/test_irida_importer.py

@@ -154,7 +154,6 @@ def _create_temp_file(file_name, file_contents):
 
         seq3 = _create_temp_file("seq3.fastq", fastq_contents)
         self.irida_session.post(sequences2, files={'file': open(seq3, 'rb')})
-        import pdb; pdb.set_trace()
         # Export to Galaxy using the button on the dropdown menu
         self.driver.get(tests_integration.galaxy_url)
         history_panel = self.driver.find_element_by_id('current-history-panel')

irida_import/tests/integration/tests_integration.py

@@ -5,7 +5,6 @@
 from os import path
 
 from webdriver_manager.chrome import ChromeDriverManager
-from webdriver_manager.core.utils import ChromeType
 from selenium.webdriver.chrome.options import Options as ChromeDriverOptions
 
 from irida_import.tests.integration.irida_data_setup import SetupIridaData
@@ -26,7 +25,7 @@
 repo_path = path.join('/tmp', 'repos')
 
 # Have ChromeDriverManager handle chrome installation and driver for compatibility with github actions
-chrome_driver_path = ChromeDriverManager(chrome_type=ChromeType.CHROMIUM).install()
+chrome_driver_path = ChromeDriverManager().install()
 chrome_driver_options = ChromeDriverOptions()
 # When creating new tests, these can be commented out to have driver window display
 chrome_driver_options.add_argument('--headless')