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Add bio.tools for mob_suite #248

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Add bio.tools for mob_suite #248

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951dcdf
Add bio.tools for mob_suite
bebatut Feb 23, 2024
f794fa3
Fix link to remote_repository_url
bebatut Feb 23, 2024
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2 changes: 1 addition & 1 deletion tools/mob_suite/.shed.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,5 +3,5 @@ description: MOB-suite is a set of software tools for clustering, reconstruction
name: mob_suite
owner: nml
long_description: The MOB-suite is designed to be a modular set of tools for the typing and reconstruction of plasmid sequences from WGS assemblies designed by Robertson James et al.
remote_repository_url: https://github.com/phac-nml/mob-suite
remote_repository_url: https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite
homepage_url: https://github.com/phac-nml/mob-suite
11 changes: 8 additions & 3 deletions tools/mob_suite/macros.xml
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Original file line number Diff line number Diff line change
@@ -1,8 +1,13 @@
<macros>
<token name="@VERSION@">3.0.3</token>
<xml name="bio_tools">
<xrefs>
<xref type="bio.tools">mob_suite</xref>
</xrefs>
</xml>
<xml name="requirements">
<requirements>
<requirement type="package" version ="@VERSION@">mob_suite</requirement>
</requirements>
<requirements>
<requirement type="package" version ="@VERSION@">mob_suite</requirement>
</requirements>
</xml>
</macros>
3 changes: 2 additions & 1 deletion tools/mob_suite/mob_recon.xml
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Expand Up @@ -2,7 +2,8 @@
<description>Type contigs and extract plasmid sequences</description>
<macros>
<import>macros.xml</import>
</macros>
</macros>
<expand macro="bio_tools"/>
<expand macro="requirements" />
<version_command>mob_recon --version</version_command>
<command detect_errors="exit_code">
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1 change: 1 addition & 0 deletions tools/mob_suite/mob_typer.xml
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Expand Up @@ -3,6 +3,7 @@
<macros>
<import>macros.xml</import>
</macros>
<expand macro="bio_tools"/>
<expand macro="requirements"/>
<version_command>mob_typer --version</version_command>
<command detect_errors="exit_code">
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