final release

phac-nml · Dec 19, 2024 · b7e6338 · b7e6338
1 parent 08f3a74
commit b7e6338
Showing 1 changed file with 13 additions and 7 deletions.
diff --git a/tools/ectyper/ectyper.xml b/tools/ectyper/ectyper.xml
@@ -104,19 +104,25 @@
   </outputs>
   <tests>
     <test expect_num_outputs="1">
-      <param name="input" value="Escherichia2.fastq" ftype="fastq"/>
-      <output name="output_result" ftype="tabular">
-        <assert_stderr>
-            <has_text text="O22"/> 
-            <has_text text="H8"/> 
-        </assert_stderr>
-      </output>  
+      <param name="input" value="Escherichia2.fastq" ftype="fastq"/> 
       <output name="output_result" ftype="tabular" >
           <assert_contents>
               <has_text_matching expression="O22"/>
+              <has_text text="H8"/> 
          </assert_contents>
       </output>
     </test>
+    <test expect_num_outputs="1">
+      <param name="input" value="Escherichia1.fasta" ftype="fasta"/>
+      <output name="output_result" ftype="tabular">
+          <assert_contents>
+              <has_text text="O103:H2"/>
+              <has_text text="EHEC-STEC"/>
+              <has_text text="stx1a;stx2a"/>
+              <has_text text="eae,ehxA,hlyE,stx1,stx2"/>  
+         </assert_contents>
+      </output>
+    </test>  
   </tests>
 
   <help>