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@paulxshen
paulxshen committed Sep 30, 2024
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195 changes: 83 additions & 112 deletions Luminescent_AI_docs.ipynb
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116 changes: 63 additions & 53 deletions Manifest.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -224,10 +224,10 @@ uuid = "4e9b3aee-d8a1-5a3d-ad8b-7d824db253f0"
version = "1.0.1+0"

[[deps.CUDA]]
deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "StaticArrays", "Statistics"]
git-tree-sha1 = "cdbdca28f19c2c7fcf34ffb48bfdaca404dcd18a"
deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "StaticArrays", "Statistics", "demumble_jll"]
git-tree-sha1 = "e0725a467822697171af4dae15cec10b4fc19053"
uuid = "052768ef-5323-5732-b1bb-66c8b64840ba"
version = "5.5.0"
version = "5.5.2"

[deps.CUDA.extensions]
ChainRulesCoreExt = "ChainRulesCore"
Expand Down Expand Up @@ -265,9 +265,9 @@ version = "1.1.0"

[[deps.CairoMakie]]
deps = ["CRC32c", "Cairo", "Cairo_jll", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"]
git-tree-sha1 = "4f827b38d3d9ffe6e3b01fbcf866c625fa259ca5"
git-tree-sha1 = "0852b8edf4da66cc44861b12d7d6c69693fc620f"
uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
version = "0.12.11"
version = "0.12.12"

[[deps.Cairo_jll]]
deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"]
Expand Down Expand Up @@ -433,10 +433,10 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
version = "1.16.0"

[[deps.DataFrames]]
deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8"
deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
git-tree-sha1 = "fb61b4812c49343d7ef0b533ba982c46021938a6"
uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
version = "1.6.1"
version = "1.7.0"

[[deps.DataStructures]]
deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
Expand All @@ -460,9 +460,9 @@ version = "0.1.2"

[[deps.DelaunayTriangulation]]
deps = ["AdaptivePredicates", "EnumX", "ExactPredicates", "Random"]
git-tree-sha1 = "94eb20e6621600f4315813b1d1fc9b8a5a6a34db"
git-tree-sha1 = "90fe18ca4b73bdd2320fbbccec727a75069455f6"
uuid = "927a84f5-c5f4-47a5-9785-b46e178433df"
version = "1.4.0"
version = "1.5.1"

[[deps.DelimitedFiles]]
deps = ["Mmap"]
Expand Down Expand Up @@ -499,9 +499,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"

[[deps.Distributions]]
deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"]
git-tree-sha1 = "e6c693a0e4394f8fda0e51a5bdf5aef26f8235e9"
git-tree-sha1 = "d7477ecdafb813ddee2ae727afa94e9dcb5f3fb0"
uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
version = "0.25.111"
version = "0.25.112"

[deps.Distributions.extensions]
DistributionsChainRulesCoreExt = "ChainRulesCore"
Expand Down Expand Up @@ -559,9 +559,9 @@ version = "0.1.4"

[[deps.FFMPEG]]
deps = ["FFMPEG_jll"]
git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8"
git-tree-sha1 = "53ebe7511fa11d33bec688a9178fac4e49eeee00"
uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a"
version = "0.4.1"
version = "0.4.2"

[[deps.FFMPEG_jll]]
deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"]
Expand All @@ -583,9 +583,9 @@ version = "1.8.0"

[[deps.FFTW_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea"
git-tree-sha1 = "4d81ed14783ec49ce9f2e168208a12ce1815aa25"
uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a"
version = "3.3.10+0"
version = "3.3.10+1"

[[deps.FLoops]]
deps = ["BangBang", "Compat", "FLoopsBase", "InitialValues", "JuliaVariables", "MLStyle", "Serialization", "Setfield", "Transducers"]
Expand Down Expand Up @@ -644,23 +644,27 @@ uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93"
version = "0.8.5"

[[deps.Flux]]
deps = ["Adapt", "ChainRulesCore", "Compat", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"]
git-tree-sha1 = "fbf100b4bed74c9b6fac0ebd1031e04977d35b3b"
deps = ["Adapt", "ChainRulesCore", "Compat", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "Setfield", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"]
git-tree-sha1 = "d7d0a182089d9d3ff0cd0b761d21020fea2b1035"
uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c"
version = "0.14.19"
version = "0.14.20"

[deps.Flux.extensions]
FluxAMDGPUExt = "AMDGPU"
FluxCUDAExt = "CUDA"
FluxCUDAcuDNNExt = ["CUDA", "cuDNN"]
FluxEnzymeExt = "Enzyme"
FluxMPIExt = "MPI"
FluxMPINCCLExt = ["CUDA", "MPI", "NCCL"]
FluxMetalExt = "Metal"

[deps.Flux.weakdeps]
AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e"
CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9"
MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"
Metal = "dde4c033-4e86-420c-a63e-0dd931031962"
NCCL = "3fe64909-d7a1-4096-9b7d-7a0f12cf0f6b"
cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd"

[[deps.Fontconfig_jll]]
Expand Down Expand Up @@ -732,9 +736,9 @@ version = "0.1.6"

[[deps.GPUCompiler]]
deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "PrecompileTools", "Preferences", "Scratch", "Serialization", "TOML", "TimerOutputs", "UUIDs"]
git-tree-sha1 = "fd8e483d0921ab300fd7c5a144f08332a8fbb745"
git-tree-sha1 = "1d6f290a5eb1201cd63574fbc4440c788d5cb38f"
uuid = "61eb1bfa-7361-4325-ad38-22787b887f55"
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version = "0.27.8"

[[deps.GeoFormatTypes]]
git-tree-sha1 = "59107c179a586f0fe667024c5eb7033e81333271"
Expand All @@ -743,9 +747,9 @@ version = "0.4.2"

[[deps.GeoInterface]]
deps = ["Extents", "GeoFormatTypes"]
git-tree-sha1 = "5921fc0704e40c024571eca551800c699f86ceb4"
git-tree-sha1 = "2f6fce56cdb8373637a6614e14a5768a88450de2"
uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f"
version = "1.3.6"
version = "1.3.7"

[[deps.GeometryBasics]]
deps = ["EarCut_jll", "Extents", "GeoInterface", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"]
Expand Down Expand Up @@ -790,9 +794,9 @@ version = "1.3.14+0"

[[deps.Graphs]]
deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"]
git-tree-sha1 = "ebd18c326fa6cee1efb7da9a3b45cf69da2ed4d9"
git-tree-sha1 = "1dc470db8b1131cfc7fb4c115de89fe391b9e780"
uuid = "86223c79-3864-5bf0-83f7-82e725a168b6"
version = "1.11.2"
version = "1.12.0"

[[deps.GridLayoutBase]]
deps = ["GeometryBasics", "InteractiveUtils", "Observables"]
Expand Down Expand Up @@ -1040,9 +1044,9 @@ weakdeps = ["Random", "RecipesBase", "Statistics"]
IntervalSetsStatisticsExt = "Statistics"

[[deps.InverseFunctions]]
git-tree-sha1 = "2787db24f4e03daf859c6509ff87764e4182f7d1"
git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb"
uuid = "3587e190-3f89-42d0-90ee-14403ec27112"
version = "0.1.16"
version = "0.1.17"
weakdeps = ["Dates", "Test"]

[deps.InverseFunctions.extensions]
Expand Down Expand Up @@ -1097,7 +1101,7 @@ version = "0.21.4"
deps = ["ArrayPadding", "ChainRulesCore", "FFTW", "Flux", "Functors", "ImageMorphology", "ImageTransformations", "LinearAlgebra", "NNlib", "Porcupine", "Random", "SparseArrays", "Statistics", "UnPack", "Zygote"]
path = "C:\\Users\\pxshe\\OneDrive\\Desktop\\Jello.jl"
uuid = "6872b481-e419-48a0-81d2-be4ee5684529"
version = "0.1.16"
version = "0.1.17"

[[deps.JpegTurbo]]
deps = ["CEnum", "FileIO", "ImageCore", "JpegTurbo_jll", "TOML"]
Expand All @@ -1107,9 +1111,9 @@ version = "0.1.5"

[[deps.JpegTurbo_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637"
git-tree-sha1 = "25ee0be4d43d0269027024d75a24c24d6c6e590c"
uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8"
version = "3.0.3+0"
version = "3.0.4+0"

[[deps.JuliaNVTXCallbacks_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
Expand All @@ -1125,9 +1129,9 @@ version = "0.2.4"

[[deps.KernelAbstractions]]
deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"]
git-tree-sha1 = "045d41a364a81e357757c566b5a69fd4a2a2c445"
git-tree-sha1 = "5126765c5847f74758c411c994312052eb7117ef"
uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
version = "0.9.26"
version = "0.9.27"

[deps.KernelAbstractions.extensions]
EnzymeExt = "EnzymeCore"
Expand Down Expand Up @@ -1186,9 +1190,9 @@ version = "18.1.7+0"

[[deps.LZO_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d"
git-tree-sha1 = "854a9c268c43b77b0a27f22d7fab8d33cdb3a731"
uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac"
version = "2.10.2+0"
version = "2.10.2+1"

[[deps.LaTeXStrings]]
git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec"
Expand Down Expand Up @@ -1350,9 +1354,9 @@ version = "0.5.13"

[[deps.Makie]]
deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageBase", "ImageIO", "InteractiveUtils", "Interpolations", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"]
git-tree-sha1 = "2281aaf0685e5e8a559982d32f17d617a949b9cd"
git-tree-sha1 = "e08a87ca672b6f26a6f7237000554d2a093d3495"
uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
version = "0.21.11"
version = "0.21.12"

[[deps.MakieCore]]
deps = ["ColorTypes", "GeometryBasics", "IntervalSets", "Observables"]
Expand Down Expand Up @@ -1464,9 +1468,9 @@ version = "0.1.5"

[[deps.NearestNeighbors]]
deps = ["Distances", "StaticArrays"]
git-tree-sha1 = "91a67b4d73842da90b526011fa85c5c4c9343fe0"
git-tree-sha1 = "3cebfc94a0754cc329ebc3bab1e6c89621e791ad"
uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce"
version = "0.4.18"
version = "0.4.20"

[[deps.Netpbm]]
deps = ["FileIO", "ImageCore", "ImageMetadata"]
Expand Down Expand Up @@ -1534,9 +1538,9 @@ version = "0.8.1+2"

[[deps.OpenSSL_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "1b35263570443fdd9e76c76b7062116e2f374ab8"
git-tree-sha1 = "7493f61f55a6cce7325f197443aa80d32554ba10"
uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
version = "3.0.15+0"
version = "3.0.15+1"

[[deps.OpenSpecFun_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
Expand Down Expand Up @@ -1658,7 +1662,7 @@ version = "1.4.3"
deps = ["ArrayPadding", "ChainRulesCore", "DataStructures", "Functors", "LinearAlgebra", "Statistics", "UnPack", "Zygote"]
path = "C:\\Users\\pxshe\\OneDrive\\Desktop\\Porcupine.jl"
uuid = "3b53a3d7-3f34-4bba-8df2-4717a8b1e972"
version = "0.1.43"
version = "0.1.44"

[[deps.PrecompileTools]]
deps = ["Preferences"]
Expand All @@ -1679,9 +1683,9 @@ version = "0.2.0"

[[deps.PrettyTables]]
deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"]
git-tree-sha1 = "66b20dd35966a748321d3b2537c4584cf40387c7"
git-tree-sha1 = "1101cd475833706e4d0e7b122218257178f48f34"
uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
version = "2.3.2"
version = "2.4.0"

[[deps.Printf]]
deps = ["Unicode"]
Expand Down Expand Up @@ -2017,9 +2021,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"]

[[deps.StringManipulation]]
deps = ["PrecompileTools"]
git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5"
git-tree-sha1 = "a6b1675a536c5ad1a60e5a5153e1fee12eb146e3"
uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e"
version = "0.3.4"
version = "0.4.0"

[[deps.StructArrays]]
deps = ["ConstructionBase", "DataAPI", "Tables"]
Expand Down Expand Up @@ -2254,15 +2258,15 @@ version = "1.2.13+1"

[[deps.Zstd_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b"
git-tree-sha1 = "555d1076590a6cc2fdee2ef1469451f872d8b41b"
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version = "1.5.6+0"
version = "1.5.6+1"

[[deps.Zygote]]
deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"]
git-tree-sha1 = "19c586905e78a26f7e4e97f81716057bd6b1bc54"
git-tree-sha1 = "f2f85ad73ca67b5d3c94239b0fde005e0fe2d900"
uuid = "e88e6eb3-aa80-5325-afca-941959d7151f"
version = "0.6.70"
version = "0.6.71"

[deps.Zygote.extensions]
ZygoteColorsExt = "Colors"
Expand All @@ -2280,6 +2284,12 @@ git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00"
uuid = "700de1a5-db45-46bc-99cf-38207098b444"
version = "0.2.5"

[[deps.demumble_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "6498e3581023f8e530f34760d18f75a69e3a4ea8"
uuid = "1e29f10c-031c-5a83-9565-69cddfc27673"
version = "1.3.0+0"

[[deps.isoband_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "51b5eeb3f98367157a7a12a1fb0aa5328946c03c"
Expand Down Expand Up @@ -2311,15 +2321,15 @@ version = "2.0.3+0"

[[deps.libpng_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4"
git-tree-sha1 = "b70c870239dc3d7bc094eb2d6be9b73d27bef280"
uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
version = "1.6.43+1"
version = "1.6.44+0"

[[deps.libsixel_jll]]
deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "libpng_jll"]
git-tree-sha1 = "d4f63314c8aa1e48cd22aa0c17ed76cd1ae48c3c"
git-tree-sha1 = "7dfa0fd9c783d3d0cc43ea1af53d69ba45c447df"
uuid = "075b6546-f08a-558a-be8f-8157d0f608a5"
version = "1.10.3+0"
version = "1.10.3+1"

[[deps.libvorbis_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"]
Expand Down
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