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Improve compilation times #262

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Improve compilation times #262

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Closes #261.

@robomics robomics added enhancement New feature or request CI Updates to the Continuous Integration pipeline labels Sep 26, 2024
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codecov bot commented Sep 26, 2024

Codecov Report

Attention: Patch coverage is 63.20646% with 319 lines in your changes missing coverage. Please review.

Project coverage is 71.50%. Comparing base (af60f39) to head (d098b0c).
Report is 2 commits behind head on main.

Files with missing lines Patch % Lines
src/hictk/load/pixel_parser.cpp 52.17% 37 Missing and 7 partials ⚠️
src/hictk/load/load.cpp 46.77% 32 Missing and 1 partial ⚠️
src/hictk/load/load.hpp 51.47% 29 Missing and 4 partials ⚠️
src/hictk/load/pixel_parser.hpp 0.00% 28 Missing ⚠️
src/hictk/validate/hic.cpp 40.47% 23 Missing and 2 partials ⚠️
src/hictk/validate/cool.cpp 76.23% 22 Missing and 2 partials ⚠️
src/hictk/load/hic.cpp 72.72% 14 Missing and 4 partials ⚠️
src/hictk/load/common.hpp 15.00% 17 Missing ⚠️
src/hictk/load/init_bin_table.cpp 72.13% 10 Missing and 7 partials ⚠️
src/hictk/validate/scool.cpp 54.05% 13 Missing and 4 partials ⚠️
... and 12 more
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #262      +/-   ##
==========================================
- Coverage   71.93%   71.50%   -0.44%     
==========================================
  Files         147      165      +18     
  Lines       13508    13531      +23     
  Branches     1557     1546      -11     
==========================================
- Hits         9717     9675      -42     
- Misses       2491     2564      +73     
+ Partials     1300     1292       -8     
Flag Coverage Δ
[tests integration](https://app.codecov.io/gh/paulsengroup/hictk/pull/262/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulsengroup) 61.98% <69.45%> (-0.16%)
[tests unittests](https://app.codecov.io/gh/paulsengroup/hictk/pull/262/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulsengroup) 51.46% <0.00%> (-0.18%)

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[devel] reduce compilation time
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