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Update the docs #236

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Update the docs #236

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Closes #213.

@robomics robomics added the documentation Improvements or additions to documentation label Aug 27, 2024
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codecov bot commented Aug 28, 2024

Codecov Report

Attention: Patch coverage is 90.00000% with 1 line in your changes missing coverage. Please review.

Project coverage is 71.93%. Comparing base (af60f39) to head (a64422a).

Files with missing lines Patch % Lines
src/hictk/cli/cli_rename_chromosomes.cpp 80.00% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #236      +/-   ##
==========================================
- Coverage   71.93%   71.93%   -0.01%     
==========================================
  Files         147      147              
  Lines       13508    13507       -1     
  Branches     1557     1557              
==========================================
- Hits         9717     9716       -1     
  Misses       2491     2491              
  Partials     1300     1300              
Flag Coverage Δ
[tests integration](https://app.codecov.io/gh/paulsengroup/hictk/pull/236/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulsengroup) 62.13% <100.00%> (-0.01%)
[tests unittests](https://app.codecov.io/gh/paulsengroup/hictk/pull/236/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulsengroup) 51.64% <0.00%> (+<0.01%)

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@robomics
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Double-check API docs.

@robomics
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TODO: mention compression formats supported by hitck load

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[docs] improve docs for hictk metadata
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