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pathologyatlas · Jun 29, 2024 · 9fd799b · 9fd799b
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diff --git a/README.md b/README.md
@@ -1,4 +1,4 @@
-## template
+# template
 
 
 **template for pathology atlas repositories**
@@ -208,3 +208,48 @@ See Microscopy with viewer:
   youtube: https://www.youtube.com/watch?v=youtube_link
 ```
 
+
+
+
+<hr>
+
+<a href="https://www.patolojiatlasi.com/"><img src ="https://www.patolojiatlasi.com/images/coverTR.png" style="width:50%;"></a>
+
+<a href="https://www.histopathologyatlas.com/"><img src ="https://www.patolojiatlasi.com/images/coverEN.png" style="width:50%;"></a>
+
+
+
+- Sosyal medyadan derlenen görüntülerden oluşan patoloji notları için [tıklayın](https://www.patolojinotlari.com/).
+
+- For social media based pathology notes [click here](https://www.patolojinotlari.com/).
+
+<a href="https://www.patolojinotlari.com/"><img src ="https://www.patolojiatlasi.com/images/patolojinotlari.com.png" style="width:50%;"></a>
+
+
+
+<iframe width="160" height="400" src="https://leanpub.com/patolojiatlasi/embed" frameborder="0" allowtransparency="true"></iframe>
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+
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+<a href="https://play.google.com/store/books/details?id=um5jEAAAQBAJ&pcampaignid=pcampaignidMKT-Other-global-all-co-prtnr-py-PartBadge-Mar2515-1"><img src="https://play.google.com/intl/en_us/badges/static/images/badges/tr_badge_web_generic.png" style="width: 250px;"></a>
+
+
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+<a href="https://books.apple.com/us/book/patoloji-atlas%C4%B1/id6456452218?itscg=30200&amp;itsct=books_box_badge&amp;ls=1" style="display: inline-block; overflow: hidden; border-radius: 13px; width: 250px; height: 83px;"><img src="https://tools.applemediaservices.com/api/badges/get-it-on-apple-books/badge/tr-tr?size=250x83&amp;releaseDate=1690848000" alt="Get it on Apple Books" style="border-radius: 13px; width: 250px; height: 83px;"></a>
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+| Atıf için (Citation)                                                                                                                                                                                                                                                                                     |
+|------------------------------------------------------------------------|
+| [![](https://zenodo.org/badge/452585667.svg)](https://zenodo.org/badge/latestdoi/452585667)                                                                                                                                                                                                              |
+| [Open Science Framework DOI: 10.17605/OSF.IO/6W5K8](https://osf.io/6w5k8/)                                                                                                                                                                                                                               |
+| [![](https://img.shields.io/github/issues/patolojiatlasi/patolojiatlasi.github.io)](https://github.com/patolojiatlasi/patolojiatlasi.github.io/issues)                                                                                                                                                   |
+| [![](https://img.shields.io/github/license/patolojiatlasi/patolojiatlasi.github.io)](https://github.com/patolojiatlasi/patolojiatlasi.github.io/blob/main/LICENSE)                                                                                                                                       |
+| <a href="https://twitter.com/intent/tweet?text=Wow:&url=https%3A%2F%2Fwww.patolojiatlasi.com%2F%20@patolojinotlari%20@serdarbalci%20"><img src="https://img.shields.io/twitter/url?label=Patoloji%20Atlas%C4%B1&amp;style=social&amp;url=https%3A%2F%2Fwww.patolojiatlasi.com%2F" alt="Twitter"/></a>    |
+| <a href="https://twitter.com/intent/tweet?text=Wow:&url=https%3A%2F%2Fwww.patolojinotlari.com%2F%20@patolojinotlari%20@serdarbalci%20"><img src="https://img.shields.io/twitter/url?label=Patoloji%20Notlar%C4%B1&amp;style=social&amp;url=https%3A%2F%2Fwww.patolojinotlari.com%2F" alt="Twitter"/></a> |
+
+
diff --git a/generate_qmd.R b/generate_qmd.R
@@ -41,19 +41,19 @@ bibliography: references.bib
 
 
 
-```{r echo=FALSE, include=TRUE}
+```{r language {{template}}, echo=FALSE, include=TRUE}
 source("./R/language.R")
 output_type <- knitr::opts_knit$get("rmarkdown.pandoc.to")
 ```
 
 
 ```{asis {{TemplateTR}} TR , echo = (language == "TR")}
-## {{TemplateTR}} {#sec-{{template}} }
+## {{template}} - {{TemplateTR}} {#sec-{{template}} }
 ```
 
 
 ```{asis {{TemplateEN}} EN , echo = (language == "EN")}
-## {{TemplateEN}} {#sec-{{template}} }
+## {{template}} - {{TemplateEN}} {#sec-{{template}} }
 ```
 
 '
@@ -574,7 +574,7 @@ yaml_string <- paste0("
 
 ## wsi_link_string ----
 
-wsi_link_wsi_string <- '
+wsi_link_string <- '
 
 
 [https://images.patolojiatlasi.com/{{template}}/](https://images.patolojiatlasi.com/{{template}}/)
@@ -589,10 +589,6 @@ wsi_link_wsi_string <- '
 <a href="https://images.patolojiatlasi.com/{{template}}/{{stain}}.html"><img alt="Tam Ekran Görmek İçin Resmi Tıklayın" src ="https://www.patolojiatlasi.com/screenshots/thumbnail_{{template}}-{{stain}}.png" style="width:25%;"></a>
 
 
-Mikroskopik görüntüleri inceleyin:
-
-<iframe src="https://images.patolojiatlasi.com/{{template}}/{{stain}}.html" style="height:600px;width:100%;" data-external="1"></iframe>
-
 
 **{{TemplateEN}}**
 
@@ -601,6 +597,19 @@ Mikroskopik görüntüleri inceleyin:
 <a href="https://images.patolojiatlasi.com/{{template}}/{{stain}}.html"><img alt="Click for Full Screen WSI" src ="https://www.patolojiatlasi.com/screenshots/thumbnail_{{template}}-{{stain}}.png" style="width:25%;"></a>
 
 
+'
+
+
+## wsi_string ----
+
+wsi_string <- '
+
+
+Mikroskopik görüntüleri inceleyin:
+
+<iframe src="https://images.patolojiatlasi.com/{{template}}/{{stain}}.html" style="height:600px;width:100%;" data-external="1"></iframe>
+
+
 See Microscopy with viewer:
 
 <iframe src="https://images.patolojiatlasi.com/{{template}}/{{stain}}.html" style="height:600px;width:100%;" data-external="1"></iframe>
@@ -628,9 +637,8 @@ youtube_string <-
 ## end_string ----
 
 end_string <-
-  ''
+  '
 
-'
 <hr>
 
 <a href="https://www.patolojiatlasi.com/"><img src ="https://www.patolojiatlasi.com/images/coverTR.png" style="width:50%;"></a>
@@ -672,10 +680,10 @@ end_string <-
 | <a href="https://twitter.com/intent/tweet?text=Wow:&url=https%3A%2F%2Fwww.patolojiatlasi.com%2F%20@patolojinotlari%20@serdarbalci%20"><img src="https://img.shields.io/twitter/url?label=Patoloji%20Atlas%C4%B1&amp;style=social&amp;url=https%3A%2F%2Fwww.patolojiatlasi.com%2F" alt="Twitter"/></a>    |
 | <a href="https://twitter.com/intent/tweet?text=Wow:&url=https%3A%2F%2Fwww.patolojinotlari.com%2F%20@patolojinotlari%20@serdarbalci%20"><img src="https://img.shields.io/twitter/url?label=Patoloji%20Notlar%C4%B1&amp;style=social&amp;url=https%3A%2F%2Fwww.patolojinotlari.com%2F" alt="Twitter"/></a> |
 
-'
 
 
 
+'
 
 
 # readme_text ----
@@ -726,14 +734,11 @@ for (s in stain) {
     stain = s
   )
 
-  wsi_link_wsi_text <- whisker::whisker.render(wsi_link_wsi_string, data_wsi)
+  wsi_link_text <- whisker::whisker.render(wsi_link_string, data_wsi)
 
-  # wsi_text <- whisker::whisker.render(wsi_string, data_wsi)
+  wsi_text <- whisker::whisker.render(wsi_string, data_wsi)
 
-  readme_text <- paste(readme_text, wsi_link_wsi_text,
-  # wsi_text,
-  sep = "\n\n"
-  )
+  readme_text <- paste(readme_text, wsi_link_text, wsi_text, sep = "\n\n")
 
 }