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@parklab

Park Lab at Harvard Medical School

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  1. nozzle nozzle Public

    Nozzle is a report generation toolkit for data analysis pipelines implemented in R.

    R 67 21

  2. NGSCheckMate NGSCheckMate Public

    Software program for checking sample matching for NGS data

    Python 123 48

  3. SigMA SigMA Public

    Mutational signature analysis for low statistics SNV data

    R 63 21

Repositories

Showing 10 of 39 repositories
  • website Public
    parklab/website’s past year of commit activity
    0 0 0 1 Updated Oct 28, 2024
  • SPECIFICANCER_data Public
    parklab/SPECIFICANCER_data’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Sep 20, 2024
  • Salamander Public

    Salamander is a non-negative matrix factorization framework for signature analysis

    parklab/Salamander’s past year of commit activity
    Python 8 MIT 0 0 0 Updated Aug 30, 2024
  • denovo_retroelements_kids_first Public
    parklab/denovo_retroelements_kids_first’s past year of commit activity
    0 0 0 0 Updated Aug 16, 2024
  • SigMA Public

    Mutational signature analysis for low statistics SNV data

    parklab/SigMA’s past year of commit activity
    R 63 21 10 0 Updated Aug 7, 2024
  • SCAN2 Public

    SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)

    parklab/SCAN2’s past year of commit activity
    Python 11 5 12 0 Updated Aug 3, 2024
  • MuSiCal Public

    A comprehensive toolkit for mutational signature analysis

    parklab/MuSiCal’s past year of commit activity
    Python 31 5 4 0 Updated Jul 19, 2024
  • xTea Public

    Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

    parklab/xTea’s past year of commit activity
    Python 101 23 8 3 Updated Jun 27, 2024
  • NGSCheckMate Public

    Software program for checking sample matching for NGS data

    parklab/NGSCheckMate’s past year of commit activity
    Python 123 MIT 48 26 3 Updated Jun 20, 2024
  • r-scan2 Public

    R package supporting the SCAN2 pipeline

    parklab/r-scan2’s past year of commit activity
    R 0 3 1 0 Updated May 22, 2024
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