Update depdencies to latest versions.

[smolkaj]

Fixes #505.

[smolkaj]

@chrispsommers, this doesn't do anything interesting other than updating a bunch of dependencies. This is often the easiest way to fix sudden build regressions :)

[chrispsommers]

Is there any lesson or advice here beyond your comment, which might help posterity?

[smolkaj]

The other lesson -- and what very likely triggered this issue -- is that our CI scripts currently use ubuntu-latest, which is a moving target. Specifically, in .github/workflows/ci-build-proto.yml, we currently have:

  build:
    runs-on: ubuntu-latest

And, sure enough, ubuntu-latest was moved from Ubuntu22.04 to Ubuntu 24.04 2 weeks ago: actions/runner-images@ae99c16.

It is typical for this to cause regressions, and it is typical that they can be fixed by simply updating all dependencies to their latest versions.

If we wanted, we could use a stable label such as ubuntu-24.04 instead of the moving label ubuntu-latest to avoid such regression. But I actually think this is a healthy forcing function to prevent bit rod, so would prefer to keep things as is.

[smolkaj]

Shall we get this merged, @chrispsommers ?