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fix blast dependency version
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oschwengers committed Mar 21, 2022
1 parent 5e4c126 commit 4a23c27
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Showing 2 changed files with 2 additions and 2 deletions.
2 changes: 1 addition & 1 deletion environment.yml
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ dependencies:
- biopython>=1.78
- prodigal>=2.6.3
- diamond>=2.0.14
- blast>=2.12.1
- blast>=2.12.0
- hmmer>=3.3.1
- infernal>=1.1.4
- mummer4>=4.0.0beta2
2 changes: 1 addition & 1 deletion platon/utils.py
Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@ def print_version(self):
DEPENDENCIES = [ # List of dependencies: tuples for: min version, max version, tool name & command line parameter, dependency check exclusion options
(Version(2,6,3), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, ('prodigal', '-v')),
(Version(2,0,14), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, ('diamond', 'help')),
(Version(2,12,1), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, ('blastn', '-version')),
(Version(2,12,0), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, ('blastn', '-version')),
(Version(3,3,1), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, ('hmmsearch', '-h')),
(Version(4,0,0), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, ('nucmer', '-V')),
(Version(1,1,2), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, ('cmscan', '-h'))
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