Merge pull request #21 from ornlneutronimaging/pypi_conda_pkg

Pypi conda pkg

.github/workflows/package.yml

@@ -45,3 +45,32 @@ jobs:
           if [ "${IS_RC}" = "true" ]; then CONDA_LABEL="rc"; fi
           echo pushing ${{ github.ref }} with label $CONDA_LABEL
           anaconda upload --label $CONDA_LABEL conda.recipe/noarch/bm3dornl*.tar.bz2
+
+  pypi-publish:
+    name: upload release to PyPI
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        shell: bash -l {0}
+    permissions:
+      # IMPORTANT: this permission is mandatory for trusted publishing
+      id-token: write
+    steps:
+      - uses: actions/checkout@v3
+      - uses: conda-incubator/setup-miniconda@v2
+        with:
+          auto-update-conda: true
+          channels: conda-forge,defaults
+          mamba-version: "*"
+          environment-file: environment.yml
+          cache-environment-key: ${{ runner.os }}-env-${{ hashFiles('**/environment.yml') }}
+          cache-downloads-key: ${{ runner.os }}-downloads-${{ hashFiles('**/environment.yml') }}
+      - name: build pypi pacakge
+        run: |
+          echo "versioningit $(versioningit .)"
+          # build the package
+          VERSION=$(versioningit .) python -m build
+      # retrieve your distributions here
+      - name: Publish package distributions to PyPI
+        if: startsWith(github.ref, 'refs/tags/v')
+        uses: pypa/gh-action-pypi-publish@release/v1

conda.recipe/meta.yaml

@@ -35,10 +35,28 @@ requirements:
 
   run:
     - python
+    - numpy
+    - scipy<1.13
+    - numba
+    - cupy
+    - scikit-image
+
+test:
+  imports:
+    - bm3dornl
+
+channels:
+  - conda-forge
+  - nvidia
+  - defaults
 
 about:
   home: {{ url }}
   license: {{ license }}
   license_family: MIT
   license_file: ../LICENSE
   summary: {{ description }}
+
+extra:
+  recipe-maintainers:
+    - kedokudo

pyproject.toml

@@ -1,15 +1,25 @@
 [project]
 name = "bm3dornl"
-description = "BM3D repo"
+description = "BM3D for streak artifact removal in neutron imaging"
 dynamic = ["version"]
 requires-python = ">=3.10"
 dependencies = [
-  # list all runtime dependencies here
+  "numpy",
+  "scipy<1.13",  # avoid a bug
+  "numba",
+  "cupy-cuda12x",  # use pre-built wheels
+  "scikit-image",
 ]
 license = { text = "MIT" }
+keywords = ["BM3D", "image processing", "neutron imaging", "denoising", "CuPy", "Numba"]
+readme = "README.md"
 
 [project.urls]
-homepage = "https://github.com/neutrons/python_project_template/"  # if no homepage, use repo url
+homepage = "https://github.com/neutrons/python_project_template/"
+repository = "https://github.com/ornlneutronimaging/bm3dornl"
+documentation = "https://bm3dornl.readthedocs.io/en/latest/"
+issues = "https://github.com/ornlneutronimaging/bm3dornl/issues"
+
 
 [build-system]
 requires = [
@@ -70,5 +80,3 @@ disable = ["too-many-locals",
            "too-many-arguments",
            "duplicate-code"
 ]
-
-# Add additional 3rd party tool configuration here as needed