Fixes for FreeBSD, including upstream

source/adios2/toolkit/transport/file/FileHTTP.cpp

@@ -8,6 +8,8 @@
  *      Author: Dmitry Ganyushin  ganyushin@gmail.com
  */
 #include "FileHTTP.h"
+#include <sys/socket.h>
+
 #include <arpa/inet.h>
 #include <cstring>
 #include <netdb.h>

thirdparty/EVPath/EVPath/cmib.c

@@ -369,9 +369,7 @@ static inline uint16_t get_local_lid(struct ibv_context *context, int port)
 }
 
 static int
-check_host(hostname, sin_addr)
-	char *hostname;
-void *sin_addr;
+check_host(char *hostname,void *sin_addr)
 {
 	struct hostent *host_addr;
 	host_addr = gethostbyname(hostname);
@@ -393,8 +391,7 @@ void *sin_addr;
 }
 
 static ib_conn_data_ptr 
-create_ib_conn_data(svc)
-	CMtrans_services svc;
+create_ib_conn_data(CMtrans_services svc)
 {
 	ib_conn_data_ptr ib_conn_data = svc->malloc_func(sizeof(struct ib_connection_data));
 	memset(ib_conn_data, 0, sizeof(struct ib_connection_data));
@@ -946,9 +943,7 @@ CMIB_data_available(transport_entry trans, CMConnection conn)
  * Accept socket connection
  */
 static void
-ib_accept_conn(void_trans, void_conn_sock)
-	void *void_trans;
-void *void_conn_sock;
+ib_accept_conn(void *void_trans, void *void_conn_sock)
 {
 	transport_entry trans = (transport_entry) void_trans;
 	int conn_sock = (int) (long) void_conn_sock;
@@ -1106,9 +1101,7 @@ void *void_conn_sock;
 }
 
 extern void
-libcmib_LTX_shutdown_conn(svc, scd)
-	CMtrans_services svc;
-ib_conn_data_ptr scd;
+libcmib_LTX_shutdown_conn(CMtrans_services svc, ib_conn_data_ptr scd)
 {
 	svc->trace_out(scd->sd->cm, "CMIB shutdown_conn, removing select %d\n",
 	               scd->fd);
@@ -1141,14 +1134,7 @@ is_private_10(int IP)
 }
 
 static int
-initiate_conn(cm, svc, trans, attrs, ib_conn_data, conn_attr_list, no_more_redirect)
-	CManager cm;
-CMtrans_services svc;
-transport_entry trans;
-attr_list attrs;
-ib_conn_data_ptr ib_conn_data;
-attr_list conn_attr_list;
-int no_more_redirect;
+initiate_conn(CManager cm, CMtrans_services svc, transport_entry trans, attr_list attrs, ib_conn_data_ptr ib_conn_data, attr_list conn_attr_list, int no_more_redirect)
 {
 	int sock;
 
@@ -1413,11 +1399,7 @@ int no_more_redirect;
  * (name_str stores the machine name).
  */
 extern CMConnection
-libcmib_LTX_initiate_conn(cm, svc, trans, attrs)
-	CManager cm;
-CMtrans_services svc;
-transport_entry trans;
-attr_list attrs;
+libcmib_LTX_initiate_conn(CManager cm, CMtrans_services svc, transport_entry trans, attr_list attrs)
 {
 	ib_conn_data_ptr ib_conn_data = create_ib_conn_data(svc);
 	attr_list conn_attr_list = create_attr_list();
@@ -1447,11 +1429,7 @@ attr_list attrs;
  * same as ours and if the IP_PORT matches the one we are listening on.
  */
 extern int
-libcmib_LTX_self_check(cm, svc, trans, attrs)
-	CManager cm;
-CMtrans_services svc;
-transport_entry trans;
-attr_list attrs;
+libcmib_LTX_self_check(CManager cm, CMtrans_services svc, transport_entry trans, attr_list attrs)
 {
 
 	ib_client_data_ptr sd = trans->trans_data;
@@ -1499,12 +1477,9 @@ attr_list attrs;
 }
 
 extern int
-libcmib_LTX_connection_eq(cm, svc, trans, attrs, scd)
-	CManager cm;
-CMtrans_services svc;
-transport_entry trans;
-attr_list attrs;
-ib_conn_data_ptr scd;
+libcmib_LTX_connection_eq(CManager cm, CMtrans_services svc, 
+			  transport_entry trans, attr_list attrs,
+			  ib_conn_data_ptr scd)
 {
 
 	int int_port_num;
@@ -1548,11 +1523,8 @@ ib_conn_data_ptr scd;
  * Create an IP socket for connection from other CMs
  */
 extern attr_list
-libcmib_LTX_non_blocking_listen(cm, svc, trans, listen_info)
-	CManager cm;
-CMtrans_services svc;
-transport_entry trans;
-attr_list listen_info;
+libcmib_LTX_non_blocking_listen(CManager cm, CMtrans_services svc,
+				transport_entry trans, attr_list listen_info)
 {
 	ib_client_data_ptr sd = trans->trans_data;
 	unsigned int length;
@@ -1714,11 +1686,8 @@ struct iovec {
 #endif
 
 extern void
-libcmib_LTX_set_write_notify(trans, svc, scd, enable)
-	transport_entry trans;
-CMtrans_services svc;
-ib_conn_data_ptr scd;
-int enable;
+libcmib_LTX_set_write_notify(transport_entry trans, CMtrans_services svc,
+			     ib_conn_data_ptr scd, int enable)
 {
 	if (enable != 0) {
 		svc->fd_write_select(trans->cm, scd->fd, (select_list_func) trans->write_possible,
@@ -1910,12 +1879,8 @@ libcmib_LTX_writev_complete_notify_func(CMtrans_services svc,
 }
 
 extern int
-libcmib_LTX_writev_func(svc, scd, iovs, iovcnt, attrs)
-CMtrans_services svc;
-ib_conn_data_ptr scd;
-void *iovs;
-int iovcnt;
-attr_list attrs;
+libcmib_LTX_writev_func(CMtrans_services svc, ib_conn_data_ptr scd,
+			void *iovs, int iovcnt, attr_list attrs)
 {
     return libcmib_LTX_writev_complete_notify_func(svc, scd, iovs, iovcnt, 
 						   attrs, NULL, NULL);
@@ -1934,9 +1899,7 @@ free_ib_data(CManager cm, void *sdv)
 }
 
 extern void *
-libcmib_LTX_initialize(cm, svc)
-	CManager cm;
-CMtrans_services svc;
+libcmib_LTX_initialize(CManager cm, CMtrans_services svc)
 {
 	static int atom_init = 0;
 

thirdparty/EVPath/EVPath/mtests/cmping.c

@@ -18,6 +18,7 @@
 #define srand48(x)
 #define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y)
 #else
+#include <sys/socket.h>
 #include <sys/wait.h>
 #include <arpa/inet.h>
 #endif

thirdparty/EVPath/EVPath/mtests/cmtest.c

@@ -18,6 +18,7 @@
 #define srand48(x)
 #define kill(x,y) TerminateProcess(OpenProcess(0, 0, (DWORD)x),y)
 #else
+#include <sys/socket.h>
 #include <sys/wait.h>
 #include <arpa/inet.h>
 #endif

thirdparty/EVPath/EVPath/rtests/evtest.c

@@ -20,6 +20,7 @@
 #define srand48(x)
 #define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y)
 #else
+#include <sys/socket.h>
 #include <sys/wait.h>
 #include <arpa/inet.h>
 #endif

thirdparty/EVPath/EVPath/rtests/extract_test.c

@@ -19,6 +19,7 @@
 #define srand48(x)
 #define kill(x,y) TerminateProcess(OpenProcess(0, 0, (DWORD)x),y)
 #else
+#include <sys/socket.h>
 #include <arpa/inet.h>
 #include <sys/wait.h>
 #endif

thirdparty/EVPath/EVPath/rtests/remote_terminal_test.c

@@ -19,6 +19,7 @@
 #define srand48(x)
 #define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y)
 #else
+#include <sys/socket.h>
 #include <arpa/inet.h>
 #include <sys/wait.h>
 #endif

thirdparty/EVPath/EVPath/tests/evtest.c

@@ -18,6 +18,7 @@
 #define srand48(x)
 #define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y)
 #else
+#include <sys/socket.h>
 #include <sys/wait.h>
 #include <arpa/inet.h>
 #endif

thirdparty/dill/dill/.clang-format

@@ -0,0 +1,18 @@
+Language:  Cpp
+BasedOnStyle:  Chromium
+BreakBeforeBraces:  Custom
+IndentWidth: 4
+ContinuationIndentWidth: 4
+AccessModifierOffset: -4
+Standard: Cpp11
+ColumnLimit: 80
+AllowAllParametersOfDeclarationOnNextLine: false
+AlwaysBreakAfterReturnType: All
+AlignEscapedNewlines: Right
+AlignAfterOpenBracket: Align
+SortUsingDeclarations: false
+IndentCaseLabels: false
+BraceWrapping:
+  AfterFunction: true
+  SplitEmptyFunction: true
+  SplitEmptyRecord: true

thirdparty/dill/dill/CMakeLists.txt

@@ -102,7 +102,7 @@ check_type_size("void*" CMAKE_SIZEOF_VOID_P)
 check_type_size("long" SIZEOF_LONG)
 set(NATIVE_CG TRUE)
 unset(NATIVE_ARCH)
-if(CMAKE_SYSTEM_PROCESSOR MATCHES "i.86|x86_64|AMD64")
+if(CMAKE_SYSTEM_PROCESSOR MATCHES "i.86|x86_64|AMD64|amd64")
   if(CMAKE_SIZEOF_VOID_P EQUAL 8)
     set(NATIVE_ARCH x86_64)
     set(HOST_X86_64 1)
@@ -200,7 +200,7 @@ endif()
 if(LIBFFI_FOUND)
   message(STATUS "Enabling emulation")
   set(EMULATION_POSSIBLE TRUE)
-elseif(DILL_IGNORE_NATIVE OR (NATIVE_ARCH STREQUAL "UNSUPPORTED"))
+elseif((DILL_IGNORE_NATIVE OR (NATIVE_ARCH STREQUAL "UNSUPPORTED")) AND NOT DILL_NATIVE_ONLY)
   find_program (AUTOCONF autoconf)
   find_program (AUTOMAKE automake)
   if ((AUTOCONF STREQUAL "AUTOCONF-NOTFOUND") OR (AUTOMAKE STREQUAL "AUTOMAKE-NOTFOUND"))
@@ -344,7 +344,6 @@ check_include_files(memory.h HAVE_MEMORY_H)
 check_include_files(sys/mman.h HAVE_SYS_MMAN_H)
 include(CheckSymbolExists)
 check_symbol_exists(__clear_cache "" CLEAR_CACHE_DEFINED)
-message(STATUS "Clear cache defined is ${CLEAR_CACHE_DEFINED}")
 
 set(NO_DISASSEMBLER TRUE)
 if(DILL_ENABLE_DISASSEMBLY)

thirdparty/ffs/ffs/CMakeLists.txt

@@ -258,6 +258,7 @@ endif()
 CHECK_INCLUDE_FILE(malloc.h HAVE_MALLOC_H)
 CHECK_INCLUDE_FILE(memory.h HAVE_MEMORY_H)
 CHECK_INCLUDE_FILE(netdb.h HAVE_NETDB_H)
+CHECK_INCLUDE_FILE(netinet/in.h HAVE_NETINET_IN_H)
 CHECK_INCLUDE_FILE(sockLib.h HAVE_SOCKLIB_H)
 CHECK_INCLUDE_FILE(stdarg.h STDC_HEADERS)
 CHECK_INCLUDE_FILE(stdlib.h HAVE_STDLIB_H)

thirdparty/ffs/ffs/cmake/BisonFlexSub.cmake

@@ -1,7 +1,8 @@
 FUNCTION (SETUP_BISON_FLEX_SUB)
 
 IF ((${CMAKE_SYSTEM_NAME} STREQUAL "Darwin") OR
-   (${CMAKE_SYSTEM_NAME} STREQUAL "Linux"))
+   (${CMAKE_SYSTEM_NAME} STREQUAL "Linux") OR
+   (${CMAKE_SYSTEM_NAME} STREQUAL "FreeBSD"))
    set (BISON_FLEX_PRECOMPILE_DIR "${CMAKE_CURRENT_SOURCE_DIR}/cod/pregen_source/Linux")
 elseif (${CMAKE_SYSTEM_NAME} STREQUAL "Windows")
    set (BISON_FLEX_PRECOMPILE_DIR "${CMAKE_CURRENT_SOURCE_DIR}/cod/pregen_source/Windows")

thirdparty/ffs/ffs/ffs/tests/context_test.c

@@ -4,6 +4,9 @@
 #ifdef STDC_HEADERS
 #include <stdlib.h>
 #endif
+#ifdef HAVE_NETINET_IN_H
+#include <netinet/in.h>
+#endif
 #include <stdio.h>
 #ifdef HAVE_UNISTD_H
 #include <unistd.h>