Merge pull request #2579 from chuckatkins/add-bp2h5-tool

utils: Simplified wrappers for adios2_reorganize
ornladios · Jan 11, 2021 · 1c999f5 · 1c999f5
2 parents 6112208 + 8b1d239
commit 1c999f5
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diff --git a/source/utils/CMakeLists.txt b/source/utils/CMakeLists.txt
@@ -77,3 +77,26 @@ install(PROGRAMS adios_deactivate_bp.sh
   RENAME adios2_deactivate_bp
   DESTINATION ${CMAKE_INSTALL_BINDIR}
   COMPONENT adios2_scripts-runtime)
+
+# Simplified wrappers for adios2_reorganize
+configure_file(
+  ${CMAKE_CURRENT_SOURCE_DIR}/adios_reorganize/adios2_reorganize_wrapper
+  ${PROJECT_BINARY_DIR}/adios2_reorganize_wrapper
+  @ONLY
+)
+if(ADIOS2_HAVE_HDF5)
+  install(PROGRAMS ${PROJECT_BINARY_DIR}/adios2_reorganize_wrapper
+    RENAME adios2_reorganize_wrapper${ADIOS2_EXECUTABLE_SUFFIX}
+    DESTINATION ${CMAKE_INSTALL_BINDIR}
+  ) 
+  install(PROGRAMS adios_reorganize/bp2h5
+    RENAME bp2h5${ADIOS2_EXECUTABLE_SUFFIX}
+    DESTINATION ${CMAKE_INSTALL_BINDIR}
+  )
+  if(ADIOS2_HAVE_MPI)
+    install(PROGRAMS adios_reorganize/bp2h5_mpi
+      RENAME bp2h5_mpi${ADIOS2_EXECUTABLE_SUFFIX}
+      DESTINATION ${CMAKE_INSTALL_BINDIR}
+    )
+  endif()
+endif()
diff --git a/source/utils/adios_reorganize/adios2_reorganize_wrapper b/source/utils/adios_reorganize/adios2_reorganize_wrapper
@@ -0,0 +1,39 @@
+#!/bin/bash
+
+if [ $# -ne 2 ]
+then
+  echo "Usage: $0 /path/to/input /path/to/output"
+  exit 1
+fi
+
+input="$1"
+output="$2"
+base_dir="$(dirname $(readlink -f "${BASH_SOURCE}"))"
+wrapper=$(basename "$0")
+case ${wrapper} in
+  bp2h5*@ADIOS2_EXECUTABLE_SUFFIX@)
+    in_engine=BPFile
+    in_params="StreamReader=ON"
+    out_engine=HDF5
+    out_params=""
+    ;;
+  *)
+    echo "Error: Unrecognized wrapper: ${wrapper}"
+    exit 2
+    ;;
+esac
+case ${wrapper} in
+  *_mpi@ADIOS2_EXECUTABLE_SUFFIX@)
+    reorg_tool="${base_dir}/adios2_reorganize_mpi@ADIOS2_EXECUTABLE_SUFFIX@"
+    ;;
+  *@ADIOS2_EXECUTABLE_SUFFIX@)
+    reorg_tool="${base_dir}/adios2_reorganize@ADIOS2_EXECUTABLE_SUFFIX@"
+    ;;
+  *)
+    echo "Error: Unrecognized wrapper: ${wrapper}"
+    exit 2
+    ;;
+esac
+
+set -x
+exec "${reorg_tool}" "${input}" "${output}" ${in_engine} "${in_params}" ${out_engine} "${out_params}"
diff --git a/source/utils/adios_reorganize/bp2h5 b/source/utils/adios_reorganize/bp2h5
@@ -0,0 +1 @@
+adios2_reorganize_wrapper
diff --git a/source/utils/adios_reorganize/bp2h5_mpi b/source/utils/adios_reorganize/bp2h5_mpi
@@ -0,0 +1 @@
+adios2_reorganize_wrapper