St. Jude Rust Labs

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10 repositories

wdl
Public
Rust crates for working with Workflow Description Language (WDL) documents.
workflow bioinformatics workflow-engine ngs next-generation-sequencing wdl wdl-workflow
Rust
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Apache License 2.0
•6•26•21•2•Updated Nov 5, 2024Nov 5, 2024
sprocket
Public
A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
workflow bioinformatics workflow-engine bioinformatics-pipeline wdl wdl-workflow wdl-devtools
Rust
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Apache License 2.0
•1•30•4•0•Updated Nov 1, 2024Nov 1, 2024
sprocket-vscode
Public
Visual Studio Code extension for Sprocket (https://github.com/stjude-rust-labs/sprocket).
workflow bioinformatics workflow-engine vscode vscode-extension wdl wdl-workflow wdl-devtools
TypeScript
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Apache License 2.0
•1•3•1•0•Updated Oct 29, 2024Oct 29, 2024
sprocket-action
Public
Run Sprocket WDL document validation as part of a CI/CD pipeline with GitHub Actions.
workflow bioinformatics workflow-engine bioinformatics-pipeline wdl wdl-workflow wdl-devtools
Shell
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Apache License 2.0
•0•3•0•0•Updated Oct 23, 2024Oct 23, 2024
chainfile
Public
A crate for working with genomics chain files.
rust bioinformatics genomics liftover
Rust
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Apache License 2.0
•1•7•0•0•Updated Oct 9, 2024Oct 9, 2024
omics
Public
Rust
•
Apache License 2.0
•0•7•1•0•Updated Oct 9, 2024Oct 9, 2024
crankshaft
Public
A Rust-based, headless workflow execution engine supporting local, cloud, and HPC.
workflow bioinformatics workflow-engine
Rust
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Apache License 2.0
•1•20•0•0•Updated Oct 5, 2024Oct 5, 2024
tes
Public
A crate for working with the Task Execution Service (TES) specification.
workflow bioinformatics workflow-engine ga4gh tes ga4gh-tes
Rust
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Apache License 2.0
•0•4•0•0•Updated Sep 23, 2024Sep 23, 2024
ngs
Public
Command line utility for working with next-generation sequencing files.
rust bioinformatics genomics ngs next-generation-sequencing
Rust
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Apache License 2.0
•2•34•2•2•Updated Aug 26, 2024Aug 26, 2024
fq
Public
Command line utility for manipulating Illumina-generated FASTQ files.
rust bioinformatics genomics next-generation-sequencing illumina fastq fastq-files
Rust
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MIT License
•5•76•5•0•Updated Jul 8, 2024Jul 8, 2024