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    12 repositories

    • bwread

      Public
      Read bigwig into pyranges or dataframe
      Cython
      •0•5•0•1•Updated Sep 3, 2024Sep 3, 2024

    • sorted_nearest

      Public
      Cython helper library for pyranges. Find nearest interval in linear time at C speed.
      Cython
      •
      BSD 3-Clause "New" or "Revised" License
      •2•2•1•2•Updated Sep 3, 2024Sep 3, 2024

    • pyrle

      Public
      Numerical Run Length Encoding and Arithmetic in Cython
      Python
      •
      MIT License
      •3•16•4•2•Updated Sep 3, 2024Sep 3, 2024

    • bamread

      Public
      Bam to Pandas DataFrame, quickly
      Cython
      •6•13•3•1•Updated Sep 3, 2024Sep 3, 2024

    • ncls

      Public
      The Nested Containment List for Python. Basically a static interval-tree that is silly fast for both construction and lookups.
      numpypythoninterval-treenclsoverlap-queries
      C
      •
      BSD 3-Clause "New" or "Revised" License
      •20•210•10•3•Updated Sep 3, 2024Sep 3, 2024

    • pyranges_1.x

      Public
      PyRanges as a DataFrame subclass.
      Python
      •
      MIT License
      •2•11•4•0•Updated Jul 25, 2024Jul 25, 2024

    • pyranges_plot

      Public
      Gene visualization package for dataframe objects generated with PyRanges
      Python
      •
      MIT License
      •1•2•3•0•Updated Jun 26, 2024Jun 26, 2024

    • pyranges

      Public
      Performant Pythonic GenomicRanges
      pythongenomicspandasdata-structuresgenomicranges
      Python
      •
      MIT License
      •46•437•83•5•Updated Jun 4, 2024Jun 4, 2024

    • pyranges_example_data

      Public
      Example data for pyranges
      0•0•0•0•Updated Dec 16, 2023Dec 16, 2023

    • pyranges_db

      Public
      pyranges add-on to fetch annotation data from UCSC, gencode and ensembl
      Python
      •0•0•0•0•Updated Feb 3, 2020Feb 3, 2020

    • fishers_exact_test

      Public
      Fishers Exact Test for Python (Cython)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •21•0•0•0•Updated Oct 2, 2019Oct 2, 2019

    • pyranges.github.io

      Public
      PyRanges docs
      R
      •0•0•0•0•Updated Oct 25, 2018Oct 25, 2018