Repositories list

• upptime

  Public
  📈 Uptime monitor and status page for OME, powered by @upptime

  uptime-monitorstatus-pageupptime

  Markdown

  •

  MIT License

  •1•1•1•1•Updated Apr 5, 2025Apr 5, 2025

• omero-cli-zarr

  Public
  omerozarrngff+ 1ome-zarr-converter

  Python

  •

  GNU General Public License v2.0

  •10•16•17•8•Updated Apr 4, 2025Apr 4, 2025

• devspace

  Public
  Continuous integration tool for OME projects

  dockercontinuous-integrationdevs+ 2jenkinsomero

  Shell

  •18•18•21•3•Updated Apr 4, 2025Apr 4, 2025

• omero-python-superbuild

  Public
  OMERO build for Python server components

  pythonbuildomero+ 1meta-repo

  4•0•1•1•Updated Apr 4, 2025Apr 4, 2025

• omero-documentation

  Public
  Sphinx-based documentation for the Open Microscopy Environment

  documentationomeroome

  Python

  •

  BSD 2-Clause "Simplified" License

  •51•22•28•6•Updated Apr 4, 2025Apr 4, 2025

• omero-py

  Public
  Python project containing Ice remoting code for OMERO

  pythoncomponentlib+ 1omero

  Python

  •

  GNU General Public License v2.0

  •34•23•55•14•Updated Apr 3, 2025Apr 3, 2025

• ngff

  Public
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  data-sciencecloudspec+ 2bioimagingfile-formats

  TypeScript

  •

  Other

  •45•132•92•15•Updated Apr 3, 2025Apr 3, 2025

• omero-server-docker

  Public
  OMERO.server production docker image

  dockeromeopenmicroscopy+ 2omero-serveromero

  Shell

  •

  BSD 2-Clause "Simplified" License

  •28•14•11•7•Updated Apr 3, 2025Apr 3, 2025

• www.openmicroscopy.org

  Public
  OME main website

  jekyll-siteome

  HTML

  •

  Creative Commons Attribution 4.0 International

  •21•5•11•3•Updated Apr 3, 2025Apr 3, 2025

• openmicroscopy

  Public
  OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded …

  pythonimagedatabase+ 3serveromerojava

  Java

  •

  GNU General Public License v2.0

  •102•210•25•7•Updated Apr 3, 2025Apr 3, 2025

• EMBL-EBI-imaging-course-04-2025

  Public
  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •6•6•1•0•Updated Apr 2, 2025Apr 2, 2025

• ome-ngff-validator

  Public
  Web page for validating OME-NGFF files

  ome-zarr

  Svelte

  •

  BSD 2-Clause "Simplified" License

  •4•6•6•2•Updated Apr 2, 2025Apr 2, 2025

• omero-build

  Public
  OMERO top-level build for all components

  buildomerometa-repo

  Dockerfile

  •7•1•3•0•Updated Apr 2, 2025Apr 2, 2025

• omero-model

  Public
  Gradle project for generating model jar for OMERO

  librarycomponentgradle+ 3modeljaromero

  Java

  •

  GNU General Public License v2.0

  •13•0•9•0•Updated Apr 1, 2025Apr 1, 2025

• meeting-minutes

  Public
  Minutes from the weekly OME community meetings

  Creative Commons Attribution 4.0 International

  •6•0•1•0•Updated Apr 1, 2025Apr 1, 2025

• omero-metadata

  Public
  OMERO plugin for metadata manipulation https://www.openmicroscopy.org/omero/

  climetadataomero

  Python

  •

  GNU General Public License v2.0

  •13•8•20•2•Updated Apr 1, 2025Apr 1, 2025

• action-workflows

  Public
  2•0•0•0•Updated Apr 1, 2025Apr 1, 2025

• omero-cli-server

  Public
  CLI plugin for managing an OMERO.server

  Python

  •

  GNU General Public License v2.0

  •3•1•0•3•Updated Mar 31, 2025Mar 31, 2025

• omero-rois

  Public
  OMERO python ROI utils

  pythonomero

  Python

  •

  GNU General Public License v2.0

  •5•3•2•2•Updated Mar 31, 2025Mar 31, 2025

• bioimage-latency-benchmark

  Public
  Jupyter Notebook

  •

  Other

  •10•7•6•4•Updated Mar 31, 2025Mar 31, 2025

• napari-ome-zarr

  Public
  A napari plugin for zarr backed OME-NGFF images

  napari-pluginzarrngff+ 1python

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •21•32•23•7•Updated Mar 31, 2025Mar 31, 2025

• omero_search_engine

  Public
  App which is used to search metadata (key-value pairs)

  Python

  •

  GNU General Public License v2.0

  •4•1•13•9•Updated Mar 31, 2025Mar 31, 2025

• omero-web

  Public
  Django-based OMERO.web client

  pythonclientdjango+ 2webomero

  Python

  •31•18•128•14•Updated Mar 31, 2025Mar 31, 2025

• ome_zarr_test_suite

  Public
  Test suite of reader and writer implementations

  Python

  •6•4•3•3•Updated Mar 31, 2025Mar 31, 2025

• omero-ms-zarr

  Public
  Experimental micro-service for implementing the Zarr spec over HTTP

  microserviceioomero+ 1zarr

  Java

  •

  GNU General Public License v2.0

  •12•18•17•1•Updated Mar 31, 2025Mar 31, 2025

• omero-demo-cleanup

  Public
  A CLI plugin for managing the disk space on the OME demo server

  Python

  •

  GNU General Public License v2.0

  •4•2•1•2•Updated Mar 31, 2025Mar 31, 2025

• omero-certificates

  Public
  OMERO server certificate management plugin

  pluginclideployment+ 3servercertificatesomero

  Python

  •

  GNU General Public License v2.0

  •7•0•2•2•Updated Mar 31, 2025Mar 31, 2025

• apacheds-docker

  Public
  Dockerfile to build an ApacheDS container providing an LDAP and optionally a Kerberos service.

  testingdockerldap+ 1ome

  Python

  •84•41•4•3•Updated Mar 31, 2025Mar 31, 2025

• build-infra

  Public
  Infrastructure for super-project builds

  Shell

  •6•0•2•1•Updated Mar 30, 2025Mar 30, 2025

• omero-gateway-java

  Public
  Gradle project containing OMERO Java Client Library

  javaapibuild+ 5sdkcomponentgradlejaromero

  Java

  •

  GNU General Public License v2.0

  •9•1•16•2•Updated Mar 30, 2025Mar 30, 2025