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    506 repositories

    • naomi

      Public
      Naomi model for subnational HIV estimation
      R
      •
      Other
      •9•9•40•7•Updated Jan 3, 2025Jan 3, 2025

    • ivRmectin

      Public
      Malaria modelling framework to assess the impact of endectocide interventions
      C
      •1•1•0•1•Updated Jan 3, 2025Jan 3, 2025

    • naomi.options

      Public
      R
      •
      Other
      •0•0•0•1•Updated Jan 2, 2025Jan 2, 2025

    • mpoxseir

      Public
      C++
      •
      Other
      •0•1•14•2•Updated Jan 2, 2025Jan 2, 2025

    • monty

      Public
      R
      •
      Other
      •0•3•2•4•Updated Dec 31, 2024Dec 31, 2024

    • wastewatchR

      Public
      Branching-process based framework to evaluate the utility of wastewater-based surveillance for emerging pathogens.
      R
      •0•2•0•0•Updated Dec 31, 2024Dec 31, 2024

    • mpoxRingVax

      Public
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Dec 30, 2024Dec 30, 2024

    • malariasimulation

      Public
      The malaria model
      R
      •
      Other
      •14•16•38•5•Updated Dec 27, 2024Dec 27, 2024

    • STAVE

      Public
      Spatial-temporal aggregate variant encoding
      R
      •
      Other
      •0•1•0•0•Updated Dec 22, 2024Dec 22, 2024

    • packit

      Public
      Web app for serving outpack and/or orderly2 metadata
      TypeScript
      •
      MIT License
      •1•1•0•2•Updated Dec 20, 2024Dec 20, 2024

    • wodin

      Public
      odin on the web
      TypeScript
      •0•0•1•5•Updated Dec 20, 2024Dec 20, 2024

    • grout

      Public
      Geo tile server
      TypeScript
      •0•0•0•1•Updated Dec 20, 2024Dec 20, 2024

    • orderly2

      Public
      R
      •
      Other
      •2•8•11•2•Updated Dec 19, 2024Dec 19, 2024

    • epireviewdb

      Public
      Database for {epireview}
      R
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • odin2

      Public
      R
      •
      Other
      •0•3•0•0•Updated Dec 19, 2024Dec 19, 2024

    • priority-pathogens

      Public
      https://mrc-ide.github.io/priority-pathogens/
      R
      •
      Creative Commons Zero v1.0 Universal
      •2•6•17•3•Updated Dec 18, 2024Dec 18, 2024

    • YEPaux

      Public
      R package containing auxiliary functions for use with YellowFeverDynamics package.
      R
      •
      MIT License
      •0•1•0•0•Updated Dec 18, 2024Dec 18, 2024

    • YEP

      Public
      A package for running a dynamic SEIRV model of yellow fever and inferring model parameters
      R
      •
      MIT License
      •1•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • NHP_in_brazil

      Public
      R
      •1•1•0•0•Updated Dec 18, 2024Dec 18, 2024

    • autodiff_odin

      Public
      R
      •
      MIT License
      •0•1•0•2•Updated Dec 17, 2024Dec 17, 2024

    • malariasimple

      Public
      HTML
      •
      Other
      •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

    • gonovax

      Public
      C
      •
      Other
      •0•3•0•0•Updated Dec 17, 2024Dec 17, 2024

    • odin-monty

      Public
      TeX
      •0•0•2•1•Updated Dec 17, 2024Dec 17, 2024

    • YellowFeverDynamics

      Public
      C++
      •
      MIT License
      •0•1•0•0•Updated Dec 16, 2024Dec 16, 2024

    • MMS-SD_workshop

      Public
      This repository holds all of the code for the Malaria Molecular Surveillance Study Design (MMS-SD) 2024 workshop held in New Orleans, USA
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • pyorderly

      Public
      Python
      •
      MIT License
      •0•1•0•3•Updated Dec 16, 2024Dec 16, 2024

    • dust2

      Public
      R
      •
      Other
      •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

    • foresite-orderly

      Public
      Orderly implementation of foresite malaria site files
      R
      •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • shiny_dide

      Public
      🌟🏥🌟 DIDE shiny server configuration
      Shell
      •
      MIT License
      •15•4•2•0•Updated Dec 12, 2024Dec 12, 2024

    • noticeboard

      Public
      DIDE noticeboard website
      HTML
      •3•0•0•1•Updated Dec 11, 2024Dec 11, 2024