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@igsr The International Sample Genome Resource (IGSR)

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    10 repositories

    • gca_1000genomes_website

      Public
      The 1000genomes website
      TypeScript
      •10•2•0•7•Updated Sep 11, 2024Sep 11, 2024

    • igsr_archive

      Public
      Contains code to perform several operations involving files in the IGSR (1000 genomes) FTP archive
      Python
      •
      Apache License 2.0
      •3•1•0•3•Updated Apr 15, 2024Apr 15, 2024

    • gca_elasticsearch_tools

      Public
      Tools for elasticsearch
      Perl
      •
      Apache License 2.0
      •6•0•0•0•Updated Apr 2, 2024Apr 2, 2024

    • gca_elasticsearch

      Public
      Tools for elasticsearch
      Perl
      •
      Apache License 2.0
      •6•0•0•1•Updated Jan 18, 2023Jan 18, 2023

    • igsr_analysis

      Public
      This repo contains code that is relevant for the analysis (Mapping, BAM qc, Variant Calling, Filtering etc...) of IGSR data
      pythonrna-seqperljupyter-notebookpipelinessnp-genotypingsnp-datanextflow-pipelines
      Jupyter Notebook
      •
      Apache License 2.0
      •5•4•2•10•Updated Dec 8, 2022Dec 8, 2022

    • igsr-code

      Public
      This code is to support the day to day running of IGSR supporting the 1000 Genomes data
      Perl
      •
      Apache License 2.0
      •1•1•0•0•Updated Nov 9, 2021Nov 9, 2021

    • gca_website_updater

      Public
      Web server for pulling from github and updating our static content websites
      Perl
      •
      Apache License 2.0
      •2•0•0•0•Updated Feb 24, 2021Feb 24, 2021

    • 1000Genomes_data_indexes

      Public
      The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource
      Apache License 2.0
      •12•42•0•1•Updated Jul 15, 2019Jul 15, 2019

    • gtex-pipeline

      Public
      GTEx & TOPMed data production and analysis pipelines
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •175•0•0•0•Updated Feb 28, 2019Feb 28, 2019

    • igsr.github.io

      Public
      The Static website content for the International Genome Sample Resource
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 30, 2015Sep 30, 2015