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@danforthcenter Donald Danforth Plant Science Center

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    106 repositories

    • plantcv-geospatial

      Public
      Geospatial add-on package to PlantCV
      Python
      •
      Mozilla Public License 2.0
      •1•1•5•2•Updated Oct 2, 2024Oct 2, 2024

    • syncomBuildR

      Public
      R
      •0•1•0•0•Updated Oct 1, 2024Oct 1, 2024

    • pcvr

      Public
      R functions for use with plantCV output
      R
      •0•3•0•0•Updated Sep 30, 2024Sep 30, 2024

    • plantcv-annotate

      Public
      add-on package for PlantCV annotation tools
      Python
      •
      Mozilla Public License 2.0
      •0•1•4•5•Updated Sep 26, 2024Sep 26, 2024

    • plantcv

      Public
      Plant phenotyping with image analysis
      sciencebioinformaticsimage-analysisplant-phenotypingplantcv
      Python
      •
      Mozilla Public License 2.0
      •263•652•79•16•Updated Sep 26, 2024Sep 26, 2024

    • 26092024_CIAT-PlantCV-Workshop

      Public
      PlantCV Workshop Materials for Alliance/CIAT
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •1•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • plantcv-extras

      Public
      An add-on package for PlantCV with extra tools
      Python
      •
      Mozilla Public License 2.0
      •0•0•1•1•Updated Sep 18, 2024Sep 18, 2024

    • napari_naive_bayes_tutorial

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Aug 22, 2024Aug 22, 2024

    • plantcv-tutorial-kmeans-clustering

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jul 30, 2024Jul 30, 2024

    • datascience

      Public
      Shell
      •
      Apache License 2.0
      •0•0•1•0•Updated Jun 26, 2024Jun 26, 2024

    • FiReMAGE

      Public
      R
      •
      GNU General Public License v3.0
      •1•1•1•0•Updated Jun 7, 2024Jun 7, 2024

    • plantcv-3-paper

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 17, 2024May 17, 2024

    • plantcv-tutorial-machine-learning

      Public
      Tutorial for analyzing image data using machine learning tools from PlantCV.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated May 16, 2024May 16, 2024

    • plantcv-tutorial-hyperspectral-smf-detection

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated May 16, 2024May 16, 2024

    • plantcv-tutorial-hyperspectral

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated May 16, 2024May 16, 2024

    • plantcv-homology-tutorials

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 16, 2024May 16, 2024

    • plantcv-tutorial-watershed

      Public
      watershed tutorial
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•1•Updated May 16, 2024May 16, 2024

    • plantcv-tutorial-roi

      Public
      Tutorial for understanding Regions of Interest using PlantCV.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated May 16, 2024May 16, 2024

    • plantcv-tutorial-threshold

      Public
      Tutorial for understanding Thresholding using PlantCV.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•1•0•1•Updated May 16, 2024May 16, 2024

    • plantcv-tutorial-input-output

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated May 16, 2024May 16, 2024

    • plantcv-tutorial-color-correction

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated May 16, 2024May 16, 2024

    • plantcv-tutorial-morphology

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•2•0•1•Updated May 16, 2024May 16, 2024

    • plantcv-tutorial-seeds

      Public
      seed workflow tutorial
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated May 16, 2024May 16, 2024

    • plantcv-tutorial-arabidopsis-tray

      Public
      Tutorial for analyzing top-down trays of plants with PlantCV
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated May 16, 2024May 16, 2024

    • plantcv-tutorial-v4-multiobject

      Public
      Tutorial for analyzing multiple plants, leaves, or objects using PlantCV v4.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 16, 2024May 16, 2024

    • plantcv-tutorial-thermal

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated May 16, 2024May 16, 2024

    • plantcv-tutorial-grayscale

      Public
      Tutorial for analyzing grayscale image data using PlantCV.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated May 16, 2024May 16, 2024

    • plantcv-tutorial-vis-nir

      Public
      plantcv-tutorial-vis-nir
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated May 16, 2024May 16, 2024

    • plantcv-tutorial-v4-VIS-single-plant

      Public
      PlantCV Tutorial using release-4.0 for single plant, VIS image (RGB) analysis
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•4•0•1•Updated May 16, 2024May 16, 2024

    • plantcv-tutorial-photosynthesis

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated May 16, 2024May 16, 2024