Repositories list

• resource-ingest-guide-schema

  Public
  A LinkML schema for describing the scope, rationale, and modeling approach for ingesting content from a single source.

  schemaetlmodel+ 1linkml

  Python

  •

  MIT License

  •0•1•2•1•Updated Aug 26, 2025Aug 26, 2025

• information-resource-registry

  Public
  The information resource registry is a listing of data sources present in the NCATS Data Translator system. Each information resource has an identifier, a short description, and an URL to more information about that resource.

  Python

  •

  Apache License 2.0

  •20•4•9•1•Updated Aug 21, 2025Aug 21, 2025

• biolink-model

  Public
  Schema and generated objects for biolink data model and upper ontology

  neo4jjson-apispecification+ 13standardgene-ontologydatamodelmonarchinitiativeobofoundrybiolinkncats-translator+ 6

  Python

  •

  Other

  •80•201•147•5•Updated Aug 20, 2025Aug 20, 2025

• kgx

  Public
  KGX is a Python library for exchanging Knowledge Graphs

  knowledge-graphncats-translatorbiolink-model

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •31•131•48•6•Updated Jul 1, 2025Jul 1, 2025

• ingest-metadata

  Public
  Jinja

  •

  MIT License

  •0•0•0•0•Updated Jun 24, 2025Jun 24, 2025

• biolink-model-toolkit

  Public
  A collection of useful python functions for looking up information and working with the Biolink Model

  biolinkncats-translatorbiolink-model

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •11•24•3•3•Updated Jun 19, 2025Jun 19, 2025

• ontobio

  Public
  python library for working with ontologies and ontology associations

  pythonbioinformaticsgraph+ 8sparqlrdfsemantic-webontologygene-ontologyoboobofoundry+ 1

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •33•128•115•20•Updated Feb 11, 2025Feb 11, 2025

• biolinkml

  Public archive
  DEPRECATED: replaced by linkml

  umlsemantic-webjson-ld+ 5deprecated-repobiolinkjson-schemaowlshex

  Python

  •

  Creative Commons Zero v1.0 Universal

  •12•23•1•0•Updated Apr 4, 2021Apr 4, 2021

• biolink-model-workshop

  Public
  Biolink Model Workshop at Biocuration 2020

  Python

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Dec 4, 2020Dec 4, 2020

• biolink-graphviz-demo

  Public
  A lightweight web application using viz.js to render Graphviz files.

  JavaScript

  •1•0•0•0•Updated Feb 22, 2017Feb 22, 2017

• biolink-java-client

  Public
  Java

  •

  Apache License 2.0

  •0•1•0•0•Updated Feb 8, 2017Feb 8, 2017

• biolink-javascript-client

  Public
  Automatically generated js client for biolink-api

  JavaScript

  •

  Apache License 2.0

  •0•1•0•0•Updated Feb 8, 2017Feb 8, 2017