Repositories list

• bioimage.io

  Public
  Website for the BioImage Model zoo -- a model zoo for bioimage analysis.

  CSS

  •

  MIT License

  •22•59•76•28•Updated Mar 8, 2025Mar 8, 2025

• JDLL

  Public
  The Java library to run Deep Learning models

  javaimglib2pytorch+ 4onnxbioimage-iodeep-learningtensorflow

  Java

  •

  Apache License 2.0

  •6•29•9•0•Updated Mar 7, 2025Mar 7, 2025

• spec-bioimage-io

  Public
  Specification for the bioimage.io model description file.

  Python

  •

  MIT License

  •17•19•40•8•Updated Mar 5, 2025Mar 5, 2025

• dev.bioimage.io

  Public
  TypeScript

  •0•0•0•0•Updated Mar 5, 2025Mar 5, 2025

• core-bioimage-io-python

  Public
  Python libraries for loading, running and packaging bioimage.io models

  deep-learningbioimagingbioimage-analysis+ 1bioimage-infomatics

  Jupyter Notebook

  •

  MIT License

  •22•30•64•8•Updated Mar 3, 2025Mar 3, 2025

• bioimageio-colab

  Public
  Collaborative image annotation and model training with human in the loop

  Python

  •0•5•4•0•Updated Feb 27, 2025Feb 27, 2025

• collection

  Public
  Maintains the resources displayed on bioimage.io (Successor to collection-bioimage-io)

  Python

  •7•2•10•4•Updated Feb 14, 2025Feb 14, 2025

• tensorflow-2-java-interface-0.5.0

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 11, 2025Feb 11, 2025

• tensorflow-2-java-interface

  Public
  Java

  •

  Apache License 2.0

  •1•2•0•0•Updated Feb 11, 2025Feb 11, 2025

• tensorflow-2-java-interface-0.2.0

  Public
  Java

  •

  Apache License 2.0

  •0•1•0•0•Updated Feb 11, 2025Feb 11, 2025

• tensorflow-1-java-interface

  Public
  Java

  •

  Apache License 2.0

  •0•2•0•0•Updated Feb 11, 2025Feb 11, 2025

• bioengine

  Public
  Jupyter Notebook

  •

  MIT License

  •0•10•3•1•Updated Feb 10, 2025Feb 10, 2025

• bioimageio-chatbot

  Public
  Your Personal Assistant in Computational Bioimaging.

  Jupyter Notebook

  •

  MIT License

  •11•39•3•1•Updated Feb 6, 2025Feb 6, 2025

• pytorch-java-interface-javacpp

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

• pytorch-java-interface

  Public
  Java

  •

  Apache License 2.0

  •0•1•0•0•Updated Feb 4, 2025Feb 4, 2025

• onnx-java-interface

  Public
  Java

  •

  Apache License 2.0

  •0•1•0•0•Updated Feb 4, 2025Feb 4, 2025

• hypha

  Public
  A serverless application framework for large-scale data management and AI model serving

  Python

  •

  MIT License

  •7•0•0•0•Updated Dec 18, 2024Dec 18, 2024

• bioimageio-uploader

  Public
  Svelte

  •2•1•22•0•Updated Nov 17, 2024Nov 17, 2024

• collection-bioimage-io

  Public
  (deprecated in favor of bioimage-io/collection) RDF collection for BioImage.IO

  Python

  •9•5•63•19•Updated Jul 8, 2024Jul 8, 2024

• hypha-helm-charts

  Public
  Smarty

  •

  MIT License

  •2•0•0•0•Updated Jun 19, 2024Jun 19, 2024

• Workshop-June2024-Madrid

  Public
  Repository for hosting all resources and details related to the AI4Life and BioImage Model Zoo workshop scheduled for June 2024 in Madrid.o

  Jupyter Notebook

  •

  MIT License

  •2•4•1•0•Updated Jun 19, 2024Jun 19, 2024

• bioimageio-uploader-service

  Public
  Review service for bioimage.io uploader

  Python

  •0•0•5•0•Updated Jun 18, 2024Jun 18, 2024

• bioengine-k8s

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated Jun 18, 2024Jun 18, 2024

• bioengine-model-runner

  Public
  Python

  •2•3•5•1•Updated Jun 12, 2024Jun 12, 2024

• bioimage-io.github.io

  Public
  HTML

  •0•0•0•0•Updated Jun 6, 2024Jun 6, 2024

• bioengine-web-client

  Public
  Web Client for running models via the BioEngine

  JavaScript

  •

  MIT License

  •0•1•1•0•Updated May 16, 2024May 16, 2024

• bioimageio-uploader-firebase

  Public
  Firebase test of bioimageio

  JavaScript

  •0•0•0•0•Updated Mar 29, 2024Mar 29, 2024

• partner-compatibility

  Public
  CI to check which resources maintained by bioimage-io/collection are compatible with registered community partners

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Mar 22, 2024Mar 22, 2024

• fiji-bioimage-io

  Public
  1•1•0•0•Updated Dec 6, 2023Dec 6, 2023

• napari-bioimageio

  Public
  Python

  •

  MIT License

  •2•7•2•18•Updated Nov 13, 2023Nov 13, 2023