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    52 repositories

    • ala-docker

      Public archive
      Dockerized version of Atlas of Living Australia components
      HTML
      •
      GNU Affero General Public License v3.0
      •13•12•22•0•Updated Feb 20, 2024Feb 20, 2024

    • pybossa-default-theme

      Public
      PyBossa default theme for the Server
      JavaScript
      •
      GNU Affero General Public License v3.0
      •68•0•8•0•Updated Jun 15, 2021Jun 15, 2021

    • ala-cas-5

      Public archive
      ALA CAS 5 implementation
      Kotlin
      •
      Apache License 2.0
      •11•0•0•0•Updated May 16, 2021May 16, 2021

    • ala-hub

      Public archive
      ALA version of the biocache-hubs webapp
      Groovy
      •21•0•0•0•Updated May 16, 2021May 16, 2021

    • spatial-hub

      Public archive
      JavaScript
      •18•0•0•0•Updated May 16, 2021May 16, 2021

    • regions

      Public archive
      Regions webapp
      Groovy
      •16•0•0•0•Updated May 11, 2021May 11, 2021

    • userdetails

      Public archive
      Atlas user management
      Groovy
      •18•0•0•0•Updated May 11, 2021May 11, 2021

    • bioatlas-wordpress-theme

      Public
      WordPress theme for Atlas main site.
      CSS
      •3•0•0•0•Updated May 7, 2021May 7, 2021

    • workshops

      Public archive
      Online material for various workshops
      HTML
      •5•0•0•0•Updated Jun 12, 2020Jun 12, 2020

    • mol-data

      Public archive
      Documentation of molecular data services provided by Biodiversity Atlas Sweden
      0•0•0•0•Updated Jun 11, 2020Jun 11, 2020

    • dashboard

      Public archive
      Atlas Dashboard
      Groovy
      •13•0•0•0•Updated May 5, 2020May 5, 2020

    • webapi

      Public archive
      Atlas Web service API app
      Groovy
      •6•1•0•0•Updated May 3, 2020May 3, 2020

    • ampliseq

      Public archive
      16S rRNA amplicon sequencing analysis workflow using QIIME2
      Nextflow
      •
      MIT License
      •127•0•0•0•Updated Apr 20, 2020Apr 20, 2020

    • configs

      Public archive
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •292•0•0•0•Updated Mar 31, 2020Mar 31, 2020

    • taxonomy-merging

      Public archive
      For running and preparing input to the ALA Taxonomy builder and nameindexer
      R
      •0•0•0•0•Updated Dec 18, 2019Dec 18, 2019

    • longread-dada2

      Public archive
      R script to denoise long read amplicon sequences with DADA2
      R
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Dec 5, 2019Dec 5, 2019

    • image-service

      Public archive
      Image repository and tiling services
      Groovy
      •17•0•0•0•Updated Dec 4, 2019Dec 4, 2019

    • spatial-service

      Public archive
      Prototype replacement for spatial portal, layers-service, analysis-service
      Groovy
      •12•0•0•0•Updated Dec 4, 2019Dec 4, 2019

    • oztrack

      Public
      Web application for uploading, viewing and analysing animal tracking data
      Java
      •
      GNU General Public License v2.0
      •7•0•0•0•Updated Nov 20, 2019Nov 20, 2019

    • ampliflow

      Public archive
      An automatic workflow for amplicon denoising and taxonomy assignment
      Nextflow
      •
      MIT License
      •1•0•3•0•Updated Nov 8, 2019Nov 8, 2019

    • zoa-docker

      Public
      A composition of components and services for zoological animal tracking
      Makefile
      •
      GNU Affero General Public License v3.0
      •0•0•2•0•Updated Oct 2, 2019Oct 2, 2019

    • data-mobilization-pipeline

      Public
      Various tools and examples to support reproducible workflows when migrating data or mobilizing data into various standard formats (.csv, .DwcA etc)
      R
      •
      GNU Affero General Public License v3.0
      •2•0•2•1•Updated Sep 26, 2019Sep 26, 2019

    • bioatlas.github.io

      Public
      Welcome to Biodiversity Atlas Sweden @ GitHub
      HTML
      •
      GNU Affero General Public License v3.0
      •0•1•1•0•Updated Sep 19, 2019Sep 19, 2019

    • archive-docker

      Public
      Object storage
      Shell
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Sep 10, 2019Sep 10, 2019

    • specieslist-webapp

      Public archive
      Species lists and traits tool
      Groovy
      •22•1•0•0•Updated Sep 4, 2019Sep 4, 2019

    • bie-index

      Public archive
      Taxonomic search services
      Groovy
      •
      Other
      •18•0•0•0•Updated Sep 4, 2019Sep 4, 2019

    • ala-bie

      Public archive
      The ALA's version of the BIE
      CSS
      •
      Other
      •14•0•0•0•Updated Sep 4, 2019Sep 4, 2019

    • ala-collectory

      Public archive
      A collectory application based on collectory plugin for ALA team.
      Groovy
      •21•0•0•0•Updated Sep 4, 2019Sep 4, 2019

    • artwork

      Public
      Styling and graphical assets
      Makefile
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Sep 2, 2019Sep 2, 2019

    • sds-webapp2

      Public archive
      Sensitive Data Service webapp
      CSS
      •9•0•0•0•Updated Jul 10, 2019Jul 10, 2019