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@WEHI-ResearchComputing WEHI Research Computing and Data

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    71 repositories

    • WEHI-ResearchComputing.github.io

      Public
      This is the website for the RCP at WEHI
      studentinternshipsengagementjekyllmarkdown
      HTML
      •
      GNU General Public License v3.0
      •16•3•1•0•Updated Feb 28, 2025Feb 28, 2025

    • DashAclEditor

      Public
      Dash GUI for editing Posix file acess control lists (ACLs)
      Python
      •
      GNU General Public License v3.0
      •0•0•3•0•Updated Feb 21, 2025Feb 21, 2025

    • mondne

      Public
      Monday.com GraphQL API client
      Python
      •0•0•0•0•Updated Feb 20, 2025Feb 20, 2025

    • nf-alphafold

      Public
      nextflow-pipelinealphafoldnf-tower
      Nextflow
      •
      Apache License 2.0
      •0•3•0•0•Updated Feb 17, 2025Feb 17, 2025

    • mondantic

      Public
      Converts Monday.com boards into Pydantic schemas and populates them
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

    • FileSenderCli

      Public
      Improved command line interface and Python API for interacting with FileSender servers
      command-linefilesender
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•6•5•0•Updated Jan 20, 2025Jan 20, 2025

    • nf-malaria-variant-analysis

      Public
      researchnextflow-pipeline
      R
      •
      MIT License
      •1•0•1•0•Updated Jan 13, 2025Jan 13, 2025

    • mtSwirl

      Public
      Python
      •9•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • rag

      Public
      RAG toy example to build on. Copied from https://github.com/pixegami/rag-tutorial-v2
      HTML
      •1•0•8•1•Updated Dec 17, 2024Dec 17, 2024

    • gnomad_methods

      Public
      Hail helper functions for the gnomAD project and Translational Genomics Group
      Python
      •
      MIT License
      •29•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • gnomad-mitochondria

      Public
      A fork of Broad's Gnomad Mitochondria package for local HPC usage.
      Python
      •
      MIT License
      •4•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • DynamicDet

      Public
      [CVPR 2023] DynamicDet: A Unified Dynamic Architecture for Object Detection
      Python
      •14•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • nextflow-config

      Public
      Official Nextflow configuration file for WEHI
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Sep 5, 2024Sep 5, 2024

    • RFdiffusion_WEHI

      Public
      Code for running RFdiffusion
      Python
      •
      Other
      •394•1•0•0•Updated Aug 29, 2024Aug 29, 2024

    • RoseTTAFold-All-Atom

      Public
      Python
      •
      Other
      •123•0•0•0•Updated Aug 28, 2024Aug 28, 2024

    • cbioportal-docker-compose

      Public
      Run cBioPortal using Docker Compose
      Shell
      •39•0•0•0•Updated Aug 27, 2024Aug 27, 2024

    • ToolParameteriser

      Public
      Repository for Benchmarking Framework
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•7•0•Updated Aug 12, 2024Aug 12, 2024

    • REDMANE_nuxt

      Public
      Vue
      •
      GNU General Public License v3.0
      •1•1•1•0•Updated Jul 14, 2024Jul 14, 2024

    • nf-template

      Public template
      A nextflow template repository
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Jul 12, 2024Jul 12, 2024

    • deepscatter-wehi-pubmed

      Public
      Visualisation of WEHI's pubmed landscape data using github.com/nomic-ai/deepscater
      TypeScript
      •
      Other
      •64•0•0•0•Updated Jul 11, 2024Jul 11, 2024

    • tarprof

      Public
      Utilities for profiling Targets workflows
      rtargetstargets-pipeline
      R
      •
      GNU General Public License v3.0
      •0•1•1•0•Updated May 29, 2024May 29, 2024

    • EnvironmentModules

      Public
      A user friendly R front-end for the Environment Modules system. Offers a way to load and unload system packages on shared HPC (High Performance Computing) environments, through R.
      environment-variablesrstatsenvironment-modules
      R
      •
      GNU General Public License v3.0
      •0•2•6•0•Updated May 27, 2024May 27, 2024

    • WEHI-Alphafold

      Public
      Open source code for AlphaFold.
      Python
      •
      Apache License 2.0
      •2.3k•0•0•0•Updated May 20, 2024May 20, 2024

    • Service_Workbench_Templates

      Public
      Templates for AWS Service Workbench from Relevance Lab
      Shell
      •13•0•0•0•Updated Apr 19, 2024Apr 19, 2024

    • container-recipes

      Public
      Container recipes created by the RCP team
      researchsingularity-containerapptainer-container
      Roff
      •
      MIT License
      •0•0•0•0•Updated Mar 7, 2024Mar 7, 2024

    • ResidBenchmarks

      Public
      Benchmarking different ways to calculate residuals in R using a number of different packages.
      0•0•0•0•Updated Dec 12, 2023Dec 12, 2023

    • Imaging-Getting-Started

      Public
      Making the HPC democratisable for Imaging researchers
      Shell
      •1•0•0•0•Updated Oct 23, 2023Oct 23, 2023

    • cbioportal-vcf2maf-pipeline

      Public
      cbioportal-vcf2maf-pipeline A pipeline, adapted from Genome Nexus annotation tools pipeline, to convert VCF files with somatic mutations into a single MAF for import into cBioPortal.
      Shell
      •0•0•0•0•Updated Oct 9, 2023Oct 9, 2023

    • stackoverflow-survey-subset

      Public
      Public data from stack overflow developer survey (2023) and iPython notebook to subset the data for healthcare academia.
      Jupyter Notebook
      •0•0•0•0•Updated Sep 28, 2023Sep 28, 2023

    • WEHI-llama2

      Public
      Inference code for LLaMA models
      dlfine-tuningllms
      Python
      •
      Other
      •9.7k•0•0•0•Updated Sep 21, 2023Sep 21, 2023