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    659 repositories

    • Genie

      Public
      Validation and processing of GENIE files
      pythonetlgeniedpecomponc
      Python
      •
      MIT License
      •9•12•1•4•Updated Mar 13, 2025Mar 13, 2025

    • snowflake

      Public
      Snowflake Administration, Transformations, and Analytics
      snowflake
      Python
      •
      Apache License 2.0
      •4•5•0•4•Updated Mar 13, 2025Mar 13, 2025

    • scicomp-provisioner

      Public
      An service to auto provision resources
      Jinja
      •
      Apache License 2.0
      •45•1•0•0•Updated Mar 12, 2025Mar 12, 2025

    • synapsePythonClient

      Public
      Programmatic interface to Synapse services for Python
      synapsepython
      Python
      •
      Apache License 2.0
      •69•70•4•4•Updated Mar 12, 2025Mar 12, 2025

    • synapse-web-monorepo

      Public
      Monorepo for Synapse Web projects
      TypeScript
      •
      Apache License 2.0
      •25•6•3•32•Updated Mar 12, 2025Mar 12, 2025

    • Synapse-Repository-Services

      Public
      The Synapse Repository Services project is the home of the JSON REST web services for Synapse.
      Java
      •
      Apache License 2.0
      •54•38•0•10•Updated Mar 12, 2025Mar 12, 2025

    • sage-monorepo

      Public
      Where OpenChallenges, Agora, and other Sage open source apps are built
      angularopenapimonorepofull-stackfairdeveloper-experiencenxagoraspecification-firstsage-bionetworks
      TypeScript
      •
      Apache License 2.0
      •13•24•149•4•Updated Mar 12, 2025Mar 12, 2025

    • Exceptional-Longevity

      Public
      Repository to store scripts for data curation and backend portal drivers for the ELITE Portal.
      HTML
      •0•1•0•0•Updated Mar 12, 2025Mar 12, 2025

    • synapser

      Public
      An R package providing programmatic access to Synapse
      rsynapse
      R
      •
      Apache License 2.0
      •22•35•7•2•Updated Mar 11, 2025Mar 11, 2025

    • core-models

      Public
      Sage repository for data models and core models work
      Python
      •1•1•3•1•Updated Mar 11, 2025Mar 11, 2025

    • schematic

      Public
      Package for biomedical data model and metadata ingress management
      schemabiomedical-informaticsdata-ingress
      Python
      •
      MIT License
      •26•25•0•3•Updated Mar 11, 2025Mar 11, 2025

    • nbconvert-webapp

      Public
      Converts ipynb file into html. Packaged for Lambda deployment
      Python
      •2•0•0•1•Updated Mar 11, 2025Mar 11, 2025

    • Synapse-Stack-Builder

      Public
      Project for building a complete Synapse Stack
      Java
      •
      Apache License 2.0
      •21•5•0•1•Updated Mar 10, 2025Mar 10, 2025

    • agora-data-tools

      Public
      A place for Agora's ETL and Data Testing
      Jupyter Notebook
      •
      Apache License 2.0
      •3•1•0•1•Updated Mar 10, 2025Mar 10, 2025

    • genie-bpc-bladder-landscape-manu

      Public
      Analyses related to the GENIE BPC Bladder cohort. Intended for a landscape manuscript.
      R
      •0•1•0•0•Updated Mar 10, 2025Mar 10, 2025

    • SynapseWebClient

      Public
      The web client of the Synapse REST service core
      JavaScript
      •
      Apache License 2.0
      •40•23•1•7•Updated Mar 10, 2025Mar 10, 2025

    • genie-ddr

      Public
      An investigation into the prevalence of oncogenic DDR mutations in the GENIE database.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 9, 2025Mar 9, 2025

    • shiny-base

      Public
      Base Docker image for Shiny applications
      Dockerfile
      •1•0•0•1•Updated Mar 7, 2025Mar 7, 2025

    • genie-bpc-pipeline

      Public
      GENIE BPC pipeline scripts
      genie
      R
      •
      MIT License
      •1•4•0•3•Updated Mar 6, 2025Mar 6, 2025

    • BridgeServer2-infra

      Public
      CloudFormation templates for BridgeServer2
      Shell
      •
      Other
      •7•0•0•1•Updated Mar 5, 2025Mar 5, 2025

    • BridgeWorkerPlatform-infra

      Public
      Setup and configure Infrastructure for Bridge Worker Platform app on AWS
      Other
      •6•0•0•1•Updated Mar 5, 2025Mar 5, 2025

    • Bridge-Exporter-infra

      Public
      Setup Bridge exporter infrastructure
      Other
      •4•0•0•2•Updated Mar 5, 2025Mar 5, 2025

    • genie-bpc-brca-landscape-manu

      Public
      Landscape manuscript analyses for the GENIE BPC cohort of Breast cancer
      R
      •0•0•0•0•Updated Mar 5, 2025Mar 5, 2025

    • agora2-infra

      Public
      Jinja
      •
      Apache License 2.0
      •2•0•0•0•Updated Mar 4, 2025Mar 4, 2025

    • AD-git-demo

      Public
      A project for AD DCC team github demonstration
      0•0•0•0•Updated Mar 4, 2025Mar 4, 2025

    • data_curator_config

      Public
      Project configurations for the Data Curator App
      21•2•0•0•Updated Feb 27, 2025Feb 27, 2025

    • agora-data-manager

      Public
      Tool to manage agora data
      Shell
      •
      Apache License 2.0
      •10•0•0•0•Updated Feb 26, 2025Feb 26, 2025

    • genie-bpc-nsclc-her2

      Public
      Repo for the NSCLC HER2 activating mutations project.
      R
      •
      MIT License
      •0•0•0•0•Updated Feb 26, 2025Feb 26, 2025

    • streamlit-snowflake-template

      Public template
      Python
      •
      Apache License 2.0
      •2•2•0•0•Updated Feb 11, 2025Feb 11, 2025

    • nx-python-starter

      Public
      A standalone Nx-powered template for Python projects, offering task orchestration, caching, and built-in tooling for streamlined development.
      Apache License 2.0
      •0•0•0•1•Updated Feb 11, 2025Feb 11, 2025