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    48 repositories

    • microjson

      Public
      Python
      •
      Other
      •6•10•0•2•Updated Mar 10, 2025Mar 10, 2025

    • sophios

      Public
      A domain specific language for creating scientific pipelines
      Python
      •
      MIT License
      •16•16•2•8•Updated Mar 7, 2025Mar 7, 2025

    • tools

      Public
      Python
      •
      MIT License
      •1•0•2•0•Updated Feb 28, 2025Feb 28, 2025

    • argolid

      Public
      C++
      •
      MIT License
      •3•0•3•0•Updated Feb 25, 2025Feb 25, 2025

    • filepattern

      Public
      Utility to extract metadata from a file name.
      Python
      •
      MIT License
      •7•5•0•0•Updated Feb 24, 2025Feb 24, 2025

    • bfiocpp

      Public
      C++
      •
      MIT License
      •3•2•0•0•Updated Feb 4, 2025Feb 4, 2025

    • image-tools

      Public
      Python
      •
      MIT License
      •40•7•15•17•Updated Jan 28, 2025Jan 28, 2025

    • tabular-tools

      Public
      Python
      •
      MIT License
      •3•1•0•5•Updated Jan 28, 2025Jan 28, 2025

    • nyxus

      Public
      A fully scalable robust image feature extraction library.
      C++
      •
      MIT License
      •8•22•3•5•Updated Jan 23, 2025Jan 23, 2025

    • bfio

      Public
      Interface to the Bioformats Java library
      image-processingimage-ionapari-plugin
      Python
      •
      MIT License
      •8•13•1•1•Updated Jan 16, 2025Jan 16, 2025

    • image-workflows

      Public
      Common Workflow Language
      •
      MIT License
      •7•0•0•6•Updated Jan 13, 2025Jan 13, 2025

    • napari-nyxus

      Public
      Python
      •
      MIT License
      •3•4•1•0•Updated Dec 30, 2024Dec 30, 2024

    • neuroglancer

      Public
      WebGL-based viewer for volumetric data
      TypeScript
      •
      Apache License 2.0
      •312•0•0•1•Updated Dec 11, 2024Dec 11, 2024

    • deck.gl

      Public
      WebGL2 powered visualization framework
      TypeScript
      •
      MIT License
      •2.1k•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • deck.gl-community

      Public
      Community contributed modules for deck.gl
      TypeScript
      •
      MIT License
      •35•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • mm-tools

      Public
      Python
      •
      MIT License
      •3•0•0•37•Updated Nov 8, 2024Nov 8, 2024

    • mm-workflows

      Public
      Molecular modeling workflows and extensions for workflow inference compiler
      Common Workflow Language
      •
      MIT License
      •12•5•0•5•Updated Oct 30, 2024Oct 30, 2024

    • aithena

      Public
      Main repository for all aithena projects.
      Python
      •1•1•0•5•Updated Oct 21, 2024Oct 21, 2024

    • jupyterlab-extensions

      Public
      Python
      •5•2•9•7•Updated Sep 12, 2024Sep 12, 2024

    • academic-rag

      Public
      MIT License
      •7•1•0•5•Updated Sep 3, 2024Sep 3, 2024

    • NVM-R-TTE

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 30, 2024Aug 30, 2024

    • tools-templates

      Public
      Python
      •
      MIT License
      •2•0•0•0•Updated Aug 15, 2024Aug 15, 2024

    • .github

      Public
      PolusAI Profile
      0•0•0•0•Updated Aug 14, 2024Aug 14, 2024

    • aithena-services

      Public
      MIT License
      •0•0•0•1•Updated Mar 27, 2024Mar 27, 2024

    • jhsingle-native-proxy

      Public
      Wrap an arbitrary webapp so it can be used in place of jupyter-singleuser in a JupyterHub setting
      Python
      •
      Apache License 2.0
      •26•0•0•1•Updated Feb 9, 2024Feb 9, 2024

    • theia

      Public
      A scalable deep learning based bleed through correction algorithm.
      Python
      •
      MIT License
      •3•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • widget-ts-cookiecutter

      Public
      A highly opinionated cookiecutter template for ipywidget extensions.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •55•0•0•0•Updated Jan 30, 2024Jan 30, 2024

    • examples

      Public
      Jupyter Notebook
      •
      MIT License
      •9•0•0•5•Updated Jan 11, 2024Jan 11, 2024

    • rshiny-server-cmd

      Public
      Command line wrapper to run a named R Shiny Server script/folder
      Python
      •
      Apache License 2.0
      •5•0•0•0•Updated Dec 29, 2023Dec 29, 2023

    • WIPP-frontend

      Public
      Web Image Processing Pipeline (WIPP) - frontend
      TypeScript
      •
      Other
      •15•0•0•16•Updated Nov 28, 2023Nov 28, 2023