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    16 repositories

    • DrawEM

      Public
      Developing brain Region Annotation With Expectation-Maximization
      C++
      •
      Apache License 2.0
      •13•21•14•1•Updated Jul 19, 2021Jul 19, 2021

    • Viewer

      Public
      The companion viewer for MIRTK, known as rview as part of IRTK.
      C++
      •
      Apache License 2.0
      •4•2•0•0•Updated Feb 28, 2021Feb 28, 2021

    • Deformable

      Public
      Deformable shape module with focus on neonatal cortex reconstruction.
      medical-imaginginflatemirtkdeformable-meshescortical-surfaces
      C++
      •
      Apache License 2.0
      •8•3•6•1•Updated Feb 1, 2021Feb 1, 2021

    • Mapping

      Public
      Brain mapping module of the Medical Image Registration ToolKit (MIRTK).
      C++
      •
      Apache License 2.0
      •2•0•1•0•Updated Jan 20, 2021Jan 20, 2021

    • Scripting

      Public
      Scripting utilities of the Medical Image Registration ToolKit (MIRTK).
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Nov 20, 2020Nov 20, 2020

    • BAtCh

      Public
      Pairwise Brain Atlas Construction (BAtCh) HTCondor/SLURM workflow
      mirtkbrain-atlasatlas-construction
      Shell
      •0•1•0•0•Updated Jul 20, 2020Jul 20, 2020

    • MetaIO

      Public
      MetaImage is the text-based tagged file format for medical images that resulted. We have now extended that file format to support a variety of objects that occur in medicine such a tubes (for vessels, needles, etc.), blobs (for arbitrary shaped objects), cubes, spheres, etc. The complete library is known at MetaIO.
      C++
      •
      Other
      •27•0•0•0•Updated Nov 18, 2019Nov 18, 2019

    • MALPEM

      Public
      Work in progress, use original package of Christian Ledig in the meantime.
      Python
      •
      Other
      •0•1•7•0•Updated Jul 22, 2018Jul 22, 2018

    • mirtk.github.io

      Public
      Online documentation of Medical Image Registration ToolKit (MIRTK)
      HTML
      •2•0•0•0•Updated Apr 8, 2018Apr 8, 2018

    • REPEAT

      Public
      REgistration PErformance Assessment Tools
      evaluation-frameworkregistrationmirtk
      Shell
      •3•1•0•0•Updated Sep 26, 2017Sep 26, 2017

    • CorticalSurfaceEvaluation

      Public
      App for manual evaluation of reconstructed cortical surfaces.
      JavaScript
      •0•1•0•0•Updated Jan 8, 2017Jan 8, 2017

    • Eigen

      Public
      Eigen header files required by Medical Image Registration ToolKit (MIRTK).
      C++
      •
      Other
      •2•0•0•0•Updated Nov 21, 2016Nov 21, 2016

    • Boost

      Public
      Boost header files required by Medical Image Registration ToolKit (MIRTK).
      C++
      •
      Boost Software License 1.0
      •1•0•0•0•Updated Jun 6, 2016Jun 6, 2016

    • LBFGS

      Public
      libLBFGS: a library of Limited-memory Broyden-Fletcher-Goldfarb-Shanno (L-BFGS)
      C
      •
      MIT License
      •193•1•0•0•Updated Apr 21, 2016Apr 21, 2016

    • NIFTI

      Public
      NIfTI C library from http://nifti.nimh.nih.gov/pub/dist/src/
      C
      •
      Other
      •2•1•0•0•Updated Apr 7, 2016Apr 7, 2016

    • GIFTI

      Public
      GIFTI C library from https://www.nitrc.org/projects/gifti/
      C
      •
      Other
      •1•0•0•0•Updated Apr 7, 2016Apr 7, 2016