Repositories list

• 2021_Murphy_Adaptive-Circuit-Dynamics-Across-Human-Cortex

  Public
  Task and analysis code for "Adaptive Circuit Dynamics Across Human Cortex During Evidence Accumulation in Changing Environments"

  MATLAB

  •4•3•0•0•Updated Aug 13, 2024Aug 13, 2024

• 2024_Monov_WM-dynamics-in-the-aging-human-brain

  Public
  Task and analysis code for "Linking cognitive integrity to working memory dynamics in the aging human brain"

  neuroimagingagingcomputational-psychiatry+ 4working-memorycognitive-neurosciencebehavioral-modellingmild-cognitive-impairment

  MATLAB

  •0•0•0•0•Updated Jun 28, 2024Jun 28, 2024

• 2023_BraunA_Adaptive_biasing_of_action-selective_cortical_build-up_activity_by_stimulus_history

  Public
  Python

  •

  GNU General Public License v2.0

  •1•0•0•0•Updated Nov 8, 2023Nov 8, 2023

• pymeg

  Public
  Python MEG tools for preprocessing etc.

  Python

  •5•1•0•0•Updated Nov 4, 2023Nov 4, 2023

• SR-mapping

  Public
  Code for van den Brink et al 2022

  MATLAB

  •2•0•0•0•Updated Nov 4, 2022Nov 4, 2022

• 2022_Urai_choicehistory_MEG

  Public
  Urai & Donner (2022). Persistent Activity in Human Parietal Cortex Mediates Perceptual Choice Repetition Bias

  MATLAB

  •

  MIT License

  •3•0•0•0•Updated Aug 3, 2022Aug 3, 2022

• 2020_Large-scale-Dynamics-of-Perceptual-Decision-Information-across-Human-Cortex

  Public
  Code for "Large-scale Dynamics of Perceptual Decision Information across Human Cortex"

  Python

  •

  GNU General Public License v2.0

  •2•1•0•0•Updated Jun 23, 2020Jun 23, 2020

• meg-preproc

  Public
  Scripts for ICA-based preprocessing MEG data for both continuous and trial-based analyses

  MATLAB

  •3•1•0•0•Updated Nov 22, 2019Nov 22, 2019

• 2019_eLife_Desender

  Public
  Repo for "Confidence predicts speed-accuracy tradeoff for subsequent decisions"

  R

  •1•2•0•0•Updated Aug 21, 2019Aug 21, 2019

• 2019_Urai_choice-history-ddm

  Public
  Urai AE, de Gee JW, Tsetsos K, Donner TH (2019) Choice history biases subsequent evidence accumulation. eLife

  MATLAB

  •

  MIT License

  •4•0•0•0•Updated Jul 15, 2019Jul 15, 2019

• 2018_CurrBio_TalluriUrai

  Public
  Repository for post-decision confirmation bias

  MATLAB

  •

  MIT License

  •2•0•0•0•Updated Mar 12, 2019Mar 12, 2019

• pupil_preprocessing_matlab

  Public
  Preprocess EyeLink pupillometry data using the FieldTrip toolbox

  AGS Script

  •8•0•0•0•Updated Nov 10, 2018Nov 10, 2018

• 2018_EJN_BergtUrai

  Public
  Bergt A, Urai AE, Donner TH, Schwabe L (2018) Reading memory formation from the eyes. bioRxiv:268490.

  MATLAB

  •

  MIT License

  •2•0•0•0•Updated May 28, 2018May 28, 2018

• motionEnergy

  Public
  Urai AE & Wimmer K (2016). Spatiotemporal motion energy filtering: a Matlab implementation.

  MATLAB

  •

  MIT License

  •6•0•0•0•Updated Apr 15, 2018Apr 15, 2018

• 2017_NatureComms_Urai

  Public
  Urai AE, Braun A, Donner TH. (2017) Pupil-linked arousal is driven by decision uncertainty and alters serial choice bias. Nature Communications 8:14637.

  MATLAB

  •

  MIT License

  •2•0•0•0•Updated Sep 1, 2017Sep 1, 2017

• Tutorials

  Public
  Tutorial notebooks ect.

  Jupyter Notebook

  •0•1•0•0•Updated Apr 28, 2017Apr 28, 2017

• 2017_eLife

  Public
  This is the analysis code from de Gee JW, Colizoli O, Kloosterman NA, Knapen T, Nieuwenhuis S & Donner TH. 2017. Dynamic modulation of decision biases by brainstem arousal systems. eLife.

  Python

  •

  MIT License

  •4•0•0•0•Updated Apr 11, 2017Apr 11, 2017

• 2014_PNAS

  Public
  This is the analysis code from de Gee JW, Knapen T & Donner TH. 2014. Decision-related pupil dilation reflects upcoming choice and individual bias. Proceedings of the National Academy of Sciences USA, 111(5), E618-E625.

  Python

  •

  MIT License

  •2•0•0•0•Updated Apr 5, 2017Apr 5, 2017

• pymode

  Public
  Design of linear models.

  Python

  •0•0•0•0•Updated Jan 14, 2016Jan 14, 2016

• confidence_exp

  Public
  Confidence experiment implementation in matlab/ptb

  MATLAB

  •2•1•0•0•Updated Dec 14, 2015Dec 14, 2015