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    20 repositories

    • 2021_Murphy_Adaptive-Circuit-Dynamics-Across-Human-Cortex

      Public
      Task and analysis code for "Adaptive Circuit Dynamics Across Human Cortex During Evidence Accumulation in Changing Environments"
      MATLAB
      •4•3•0•0•Updated Aug 13, 2024Aug 13, 2024

    • 2024_Monov_WM-dynamics-in-the-aging-human-brain

      Public
      Task and analysis code for "Linking cognitive integrity to working memory dynamics in the aging human brain"
      neuroimagingagingcomputational-psychiatryworking-memorycognitive-neurosciencebehavioral-modellingmild-cognitive-impairment
      MATLAB
      •0•0•0•0•Updated Jun 28, 2024Jun 28, 2024

    • 2023_BraunA_Adaptive_biasing_of_action-selective_cortical_build-up_activity_by_stimulus_history

      Public
      Python
      •
      GNU General Public License v2.0
      •1•0•0•0•Updated Nov 8, 2023Nov 8, 2023

    • pymeg

      Public
      Python MEG tools for preprocessing etc.
      Python
      •5•1•0•0•Updated Nov 4, 2023Nov 4, 2023

    • SR-mapping

      Public
      Code for van den Brink et al 2022
      MATLAB
      •2•0•0•0•Updated Nov 4, 2022Nov 4, 2022

    • 2022_Urai_choicehistory_MEG

      Public
      Urai & Donner (2022). Persistent Activity in Human Parietal Cortex Mediates Perceptual Choice Repetition Bias
      MATLAB
      •
      MIT License
      •3•0•0•0•Updated Aug 3, 2022Aug 3, 2022

    • 2020_Large-scale-Dynamics-of-Perceptual-Decision-Information-across-Human-Cortex

      Public
      Code for "Large-scale Dynamics of Perceptual Decision Information across Human Cortex"
      Python
      •
      GNU General Public License v2.0
      •2•2•0•0•Updated Jun 23, 2020Jun 23, 2020

    • meg-preproc

      Public
      Scripts for ICA-based preprocessing MEG data for both continuous and trial-based analyses
      MATLAB
      •3•1•0•0•Updated Nov 22, 2019Nov 22, 2019

    • 2019_eLife_Desender

      Public
      Repo for "Confidence predicts speed-accuracy tradeoff for subsequent decisions"
      R
      •1•2•0•0•Updated Aug 21, 2019Aug 21, 2019

    • 2019_Urai_choice-history-ddm

      Public
      Urai AE, de Gee JW, Tsetsos K, Donner TH (2019) Choice history biases subsequent evidence accumulation. eLife
      MATLAB
      •
      MIT License
      •4•0•0•0•Updated Jul 15, 2019Jul 15, 2019

    • 2018_CurrBio_TalluriUrai

      Public
      Repository for post-decision confirmation bias
      MATLAB
      •
      MIT License
      •2•0•0•0•Updated Mar 12, 2019Mar 12, 2019

    • pupil_preprocessing_matlab

      Public
      Preprocess EyeLink pupillometry data using the FieldTrip toolbox
      AGS Script
      •8•1•0•0•Updated Nov 10, 2018Nov 10, 2018

    • 2018_EJN_BergtUrai

      Public
      Bergt A, Urai AE, Donner TH, Schwabe L (2018) Reading memory formation from the eyes. bioRxiv:268490.
      MATLAB
      •
      MIT License
      •2•0•0•0•Updated May 28, 2018May 28, 2018

    • motionEnergy

      Public
      Urai AE & Wimmer K (2016). Spatiotemporal motion energy filtering: a Matlab implementation.
      MATLAB
      •
      MIT License
      •6•0•0•0•Updated Apr 15, 2018Apr 15, 2018

    • 2017_NatureComms_Urai

      Public
      Urai AE, Braun A, Donner TH. (2017) Pupil-linked arousal is driven by decision uncertainty and alters serial choice bias. Nature Communications 8:14637.
      MATLAB
      •
      MIT License
      •2•0•0•0•Updated Sep 1, 2017Sep 1, 2017

    • Tutorials

      Public
      Tutorial notebooks ect.
      Jupyter Notebook
      •0•4•0•0•Updated Apr 28, 2017Apr 28, 2017

    • 2017_eLife

      Public
      This is the analysis code from de Gee JW, Colizoli O, Kloosterman NA, Knapen T, Nieuwenhuis S & Donner TH. 2017. Dynamic modulation of decision biases by brainstem arousal systems. eLife.
      Python
      •
      MIT License
      •4•0•0•0•Updated Apr 11, 2017Apr 11, 2017

    • 2014_PNAS

      Public
      This is the analysis code from de Gee JW, Knapen T & Donner TH. 2014. Decision-related pupil dilation reflects upcoming choice and individual bias. Proceedings of the National Academy of Sciences USA, 111(5), E618-E625.
      Python
      •
      MIT License
      •2•0•0•0•Updated Apr 5, 2017Apr 5, 2017

    • pymode

      Public
      Design of linear models.
      Python
      •0•0•0•0•Updated Jan 14, 2016Jan 14, 2016

    • confidence_exp

      Public
      Confidence experiment implementation in matlab/ptb
      MATLAB
      •2•1•0•0•Updated Dec 14, 2015Dec 14, 2015