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    69 repositories

    • ThermoMPNN-docker

      Public
      This repo contains the Dockerfile and the drone hookup for ThermoMPNN.
      Python
      •
      MIT License
      •18•0•0•0•Updated Oct 8, 2024Oct 8, 2024

    • RoseTTAFold-All-Atom

      Public
      Our Version of RoseTTAFold All Atom
      Python
      •
      Other
      •110•0•0•0•Updated Oct 7, 2024Oct 7, 2024

    • alphafold

      Public
      Open source code for AlphaFold.
      Python
      •
      Apache License 2.0
      •2.2k•0•0•1•Updated Aug 19, 2024Aug 19, 2024

    • auth0-authorization

      Public
      Auth0 Authorization Extension API client library
      typescriptauth0
      TypeScript
      •
      BSD 2-Clause "Simplified" License
      •3•0•0•6•Updated Jun 20, 2024Jun 20, 2024

    • RoseTTAFold2NA

      Public
      Our copy of RoseTTAFold2NA.
      Python
      •
      MIT License
      •73•0•0•0•Updated Jun 4, 2024Jun 4, 2024

    • RFdiffusion

      Public
      Code for running RFdiffusion
      Python
      •
      Other
      •336•0•0•1•Updated May 23, 2024May 23, 2024

    • ProteinMPNN-docker

      Public
      A fork of protein mpnn which has the logic for building a docker container.
      Jupyter Notebook
      •
      MIT License
      •295•0•0•0•Updated May 22, 2024May 22, 2024

    • rosetta-tools

      Public
      Tools for parsing Rosetta source code and scripts for running specific Rosetta applications.
      Python
      •
      Other
      •1•0•0•2•Updated Mar 18, 2024Mar 18, 2024

    • rosetta-documentation

      Public
      Documentation for Rosetta Applications
      PostScript
      •
      Other
      •2•0•0•0•Updated Mar 18, 2024Mar 18, 2024

    • additional_protocol_data

      Public
      A repository for holding canonical inputs for Rosetta used by some (but not all) protocols; this is for data too big to go in main/database and that is not tightly coupled to the code in main/.
      Roff
      •
      Other
      •1•0•0•0•Updated Mar 18, 2024Mar 18, 2024

    • rf_diffusion_all_atom

      Public
      Our version of RFAllAtom Diffusion where we can add tools necessary for running on the cloud.
      Python
      •
      Other
      •45•0•0•0•Updated Mar 13, 2024Mar 13, 2024

    • tcrmodel2

      Public
      This is our fork of the tcrmodel2 repo. For now it just contains the docker file for building an image capable of running the tool.
      Python
      •
      Apache License 2.0
      •5•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • drone-docker

      Public
      Drone plugin for publishing Docker images
      Go
      •
      Apache License 2.0
      •318•0•0•0•Updated Aug 31, 2023Aug 31, 2023

    • ProteinMPNN

      Public
      Code for the ProteinMPNN paper
      Jupyter Notebook
      •
      MIT License
      •295•0•0•1•Updated Aug 25, 2023Aug 25, 2023

    • evopro

      Public
      Python
      •6•0•0•0•Updated Jun 26, 2023Jun 26, 2023

    • esm

      Public
      Evolutionary Scale Modeling (esm): Pretrained language models for proteins
      Python
      •
      MIT License
      •635•0•0•0•Updated Jun 14, 2023Jun 14, 2023

    • openfold

      Public
      Trainable PyTorch reproduction of AlphaFold 2
      Python
      •
      Apache License 2.0
      •530•0•0•1•Updated Jan 30, 2023Jan 30, 2023

    • clustalo-python

      Public
      A Python wrapper around Clustal Omega (http://www.clustal.org/omega/)
      C
      •
      MIT License
      •13•0•0•0•Updated Oct 3, 2022Oct 3, 2022

    • RoseTTAFold

      Public
      This package contains deep learning models and related scripts for RoseTTAFold
      Python
      •
      MIT License
      •438•1•0•0•Updated Mar 7, 2022Mar 7, 2022

    • drone-kaniko

      Public
      Drone plugin for building and publishing Docker images
      Go
      •
      Apache License 2.0
      •56•0•0•0•Updated Mar 2, 2021Mar 2, 2021

    • auth0-backup

      Public
      Auth0 tenant backup script
      infrastructurebackupsauth0
      Shell
      •
      MIT License
      •1•1•0•0•Updated Jan 22, 2021Jan 22, 2021

    • argo

      Public
      Get stuff done with container-native workflows for Kubernetes.
      Go
      •
      Apache License 2.0
      •3.2k•0•0•4•Updated Sep 14, 2020Sep 14, 2020

    • PerfKitBenchmarker

      Public
      PerfKit Benchmarker (PKB) contains a set of benchmarks to measure and compare cloud offerings. The benchmarks use default settings to reflect what most users will see. PerfKit Benchmarker is licensed under the Apache 2 license terms. Please make sure to read, understand and agree to the terms of the LICENSE and CONTRIBUTING files before proceeding.
      Python
      •
      Apache License 2.0
      •510•0•0•0•Updated Aug 7, 2020Aug 7, 2020

    • MolProbity

      Public
      Protein and nucleic acid validation service
      Perl
      •
      Other
      •30•0•0•0•Updated Jun 10, 2020Jun 10, 2020

    • trRosetta_fold

      Public
      a modified version of the trRosetta folding protocol
      Python
      •
      Other
      •1•8•0•0•Updated Apr 3, 2020Apr 3, 2020

    • pv

      Public
      WebGL protein viewer
      JavaScript
      •
      MIT License
      •86•0•0•1•Updated Sep 18, 2019Sep 18, 2019

    • Kekule.js

      Public
      A javascript cheminformatics toolkit.
      JavaScript
      •
      MIT License
      •61•0•0•0•Updated Mar 19, 2019Mar 19, 2019

    • cyrus-storage

      Public
      Utility functions for storing and retrieving data from different sources (i.e. GCS, AWS S3, HDD, RAM, etc)
      JavaScript
      •1•0•2•0•Updated Mar 11, 2019Mar 11, 2019

    • chargify

      Public
      Chargify API client library
      chargify
      TypeScript
      •1•0•0•0•Updated Mar 11, 2019Mar 11, 2019

    • kiwi

      Public
      Open source full-featured test case management system
      Python
      •
      GNU General Public License v2.0
      •293•0•0•0•Updated Feb 6, 2019Feb 6, 2019