Cámara Lab

All

11 repositories

CAJAL
Public
A Python package using Gromov-Wasserstein distance to compare cell shapes
Python
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MIT License
•5•15•0•1•Updated Nov 5, 2024Nov 5, 2024
ConDecon
Public
R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA-seq data.
R
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MIT License
•1•11•0•0•Updated Oct 17, 2024Oct 17, 2024
ImmunoPheno
Public
MIT License
•0•0•0•0•Updated Oct 16, 2024Oct 16, 2024
STvEA
Public
Spatially-resolved Transcriptomics via Epitope Anchoring
immunohistochemical-images single-cell-rna-seq single-cell-proteomics cytometry-analysis-pipeline
R
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GNU General Public License v3.0
•4•17•1•0•Updated Apr 1, 2024Apr 1, 2024
moduli
Public
R
•1•0•0•0•Updated Oct 26, 2022Oct 26, 2022
EPN_Classifier
Public
EPNClassifier assigns ependymal tumors profiled by bulk transcriptomics (RNA-seq or microarrays) into molecular subgroups.
ependymoma molecular-subgroups epn-tumor
R
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GNU General Public License v3.0
•0•1•0•0•Updated Jun 2, 2022Jun 2, 2022
TDA-TCGA
Public
R package for the identification of cancer-associated mutated genes using gene expression and mutation data.
R
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GNU General Public License v3.0
•5•10•0•0•Updated Oct 29, 2021Oct 29, 2021
RayleighSelection
Public
An R package for feature selection in topological spaces.
machine-learning feature-selection topological-data-analysis
R
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MIT License
•3•11•0•0•Updated Aug 12, 2021Aug 12, 2021
AdjacencyScore
Public
R package assessing co-localization of features in a graph
R
•0•1•0•0•Updated May 19, 2021May 19, 2021
scTDA
Public
An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
single-cell-rna-seq topological-data-analysis
Python
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GNU General Public License v3.0
•21•51•4•1•Updated Jul 12, 2018Jul 12, 2018
TARGet
Public
Topological inference of horizontal evolution from multiple sequence alignments
genomics topological-data-analysis recombination
C++
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GNU General Public License v3.0
•5•0•5•0•Updated Apr 30, 2017Apr 30, 2017