Skip to content

@CNIC-Proteomics Proteomics at the Spanish National Center of Cardiovascular Research

Change the repository type filter

All

    Repositories list

    55 repositories

    • TurboPutative-web

      Public
      metabolomicslc-msdata-processinguntargeted-metabolomics
      HTML
      •
      Other
      •0•0•0•0•Updated Oct 4, 2024Oct 4, 2024

    • next-Launcher-app

      Public
      Web application for the next-Launcher system
      CSS
      •0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • TurboOmics

      Public
      Next.js application for Proteomics and Metabolomics integration implemented in TurboPutative
      JavaScript
      •
      Other
      •1•1•0•0•Updated Sep 27, 2024Sep 27, 2024

    • fetchCMM

      Public
      JavaScript
      •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • next-Launcher

      Public
      Core for the next-Launcher: backend and frontend systems
      Dockerfile
      •0•0•0•0•Updated Sep 24, 2024Sep 24, 2024

    • nextflow-api

      Public
      Nextflow-API is a web application and REST API for submitting and monitoring Nextflow pipelines on a variety of execution environments.
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 24, 2024Sep 24, 2024

    • bioDataHub

      Public
      Scripts that create databases used by iSanXoT
      Python
      •0•0•0•0•Updated Sep 12, 2024Sep 12, 2024

    • SANPRO

      Public
      The programs for the iSanXoT results
      Python
      •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

    • nf-SearchEngine

      Public
      nf-SearchEngine is a Nextflow pipeline that execute the MSFragger search engine for the peptide identification.
      Groovy
      •
      Other
      •0•1•0•0•Updated Sep 3, 2024Sep 3, 2024

    • nf-ReFrag

      Public
      Nextflow for ReFrag pipeline
      Groovy
      •0•0•0•0•Updated Sep 2, 2024Sep 2, 2024

    • nf-PTM-compass

      Public
      nf-PTM-compass is a Nextflow pipeline that enhances the identification and quantification of Post-Translational Modifications (PTMs).
      Groovy
      •
      Other
      •0•0•0•0•Updated Aug 7, 2024Aug 7, 2024

    • SHIFTS

      Public
      SHIFTS is a battery of programs for high-throughput PTM (Post Translational Modifications) processing. SHIFTS identifies peaks in the Delta Mass distribution, assigns PSMs to peaks, and calculates FDR for peptide identification.
      Python
      •3•0•0•0•Updated Aug 6, 2024Aug 6, 2024

    • nf-modules

      Public
      Modules for nextflow pipelines
      Nextflow
      •0•0•0•0•Updated Jul 16, 2024Jul 16, 2024

    • Solvers-PTMap

      Public
      Python
      •0•0•0•0•Updated Jul 9, 2024Jul 9, 2024

    • ReFrag

      Public
      Recom rebuilt for MSFragger
      Python
      •
      Other
      •0•0•0•0•Updated Jul 8, 2024Jul 8, 2024

    • mz_extractor

      Public
      Python
      •0•0•0•0•Updated Jul 8, 2024Jul 8, 2024

    • iSanXoT

      Public
      Stand-alone application that executes workflows for quantitative high-throughput proteomics, systems biology and the statistical analysis, integration and comparison of experiments, based on SanXoT integrations.
      workflowproteomics
      Python
      •
      Other
      •1•1•0•1•Updated Jul 8, 2024Jul 8, 2024

    • pyVseq

      Public
      Vseq rebuilt in Python
      Python
      •
      Other
      •1•0•0•0•Updated Jul 2, 2024Jul 2, 2024

    • nf-SHIFTS

      Public
      Nextflow for SHIFTS pipeline
      Groovy
      •0•0•0•0•Updated May 10, 2024May 10, 2024

    • nf-PTM-Solver

      Public
      Nextflow for SOLVER pipeline
      Groovy
      •0•0•0•0•Updated Apr 11, 2024Apr 11, 2024

    • ReportAnalysis

      Public
      Scripts for Report Analysis
      JavaScript
      •0•0•0•0•Updated Apr 9, 2024Apr 9, 2024

    • quantMS-PTM

      Public
      Quantitative Mass Spectrometry and Post-Translational Modifications Analysis Workflow
      Python
      •0•0•0•0•Updated Apr 3, 2024Apr 3, 2024

    • Multiomics-pipeline

      Public
      Set of Jupyter Notebooks, scripts and libraries to perform the multiomics integration.
      Jupyter Notebook
      •0•0•0•0•Updated Nov 14, 2023Nov 14, 2023

    • sanREST

      Public
      A RESTful API that describes the web services and the operations for the report files of iSanXoT.
      CSS
      •0•0•0•0•Updated Oct 31, 2023Oct 31, 2023

    • TurboPutative-2

      Public
      C++
      •
      Other
      •0•0•0•0•Updated Oct 11, 2023Oct 11, 2023

    • DBCleaner

      Public
      Python
      •0•0•0•0•Updated Dec 12, 2022Dec 12, 2022

    • ReCom

      Public
      Branch of Comet MS/MS
      C
      •
      Apache License 2.0
      •1•0•0•0•Updated Dec 1, 2022Dec 1, 2022

    • MiCoDIS

      Public
      JavaScript
      •0•0•0•0•Updated Sep 9, 2022Sep 9, 2022

    • PAnTeomics

      Public
      Peptidoform Annotation Tool for proteomic analysis
      Python
      •0•0•0•0•Updated Jul 20, 2022Jul 20, 2022

    • corrNetwork

      Public
      Python
      •0•0•0•0•Updated Jun 17, 2022Jun 17, 2022