feat: variant-index refactoring (#29)

opentargets · Oct 4, 2024 · 7306a67 · 7306a67
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commit 7306a67
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Showing 17 changed files with 648 additions and 217 deletions.
diff --git a/config/datasets/ot_gcp.yaml b/config/datasets/ot_gcp.yaml
diff --git a/config/ot_config.yaml b/config/ot_config.yaml
diff --git a/config/step/ot_colocalisation_coloc.yaml b/config/step/ot_colocalisation_coloc.yaml
diff --git a/config/step/ot_colocalisation_ecaviar.yaml b/config/step/ot_colocalisation_ecaviar.yaml
diff --git a/config/step/ot_gene_index.yaml b/config/step/ot_gene_index.yaml
diff --git a/config/step/ot_locus_to_gene_predict.yaml b/config/step/ot_locus_to_gene_predict.yaml
diff --git a/config/step/ot_locus_to_gene_train.yaml b/config/step/ot_locus_to_gene_train.yaml
diff --git a/config/step/ot_variant_index.yaml b/config/step/ot_variant_index.yaml
diff --git a/config/step/ot_variant_to_gene.yaml b/config/step/ot_variant_to_gene.yaml
diff --git a/config/step/session/dataproc.yaml b/config/step/session/dataproc.yaml
diff --git a/poetry.lock b/poetry.lock
diff --git a/pyproject.toml b/pyproject.toml
@@ -26,6 +26,7 @@ pendulum = "^3.0.0"
 apache-airflow-providers-apache-beam = "^5.7.1"
 requests = "^2.32.3"
 pyhocon = "^0.3.61"
+pandas = ">=2.1.2,<2.2"
 
 [tool.poetry.group.dev.dependencies]
 ruff = "^0.4.9"