Fix scVI workflow not passing the layer to the component. (#936)

* Fix scVI workflow not passing the layer to the component. * Update CHANGELOG
openpipelines-bio · Dec 17, 2024 · c040482 · c040482
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,3 +1,9 @@
+# openpipelines 1.0.4
+
+## BUG FIXES
+
+* `scvi_leiden` workflow: fix the input layer argument of the workflow not being passed to the scVI component (backported from PR #936 and PR #938). 
+
 # openpipelines 1.0.3
 
 ## BUG FIXES

diff --git a/src/workflows/integration/scvi_leiden/main.nf b/src/workflows/integration/scvi_leiden/main.nf
@@ -24,7 +24,8 @@ workflow run_wf {
           "lr_factor": state.lr_factor,
           "lr_patience": state.lr_patience,
           "output_model": state.output_model,
-          "modality": state.modality
+          "modality": state.modality,
+          "input_layer": state.layer,
        ]
       },
     // use map when viash 0.7.6 is released