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Adding R CMD Checks for older versions of R (#324)
* workflow updates * Re-build README.Rmd * plot() fix * Fix broken code and updated vignettes * Update test-watchdog_testfiles.R * Re-build README.Rmd Co-authored-by: GitHub Actions <actions@github.com> Co-authored-by: shaesen2 <shaesen2@its.jnj.com> Co-authored-by: Tim Treis <tim.treis@outlook.de>
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| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | ||
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
| # | ||
| # NOTE: This workflow is overkill for most R packages and | ||
| # check-standard.yaml is likely a better choice. | ||
| # usethis::use_github_action("check-standard") will install it. | ||
| on: | ||
| push: | ||
| branches: [main, master, develop] | ||
| pull_request: | ||
| branches: [main, master, develop] | ||
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| name: R-CMD-check | ||
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| jobs: | ||
| R-CMD-check: | ||
| runs-on: ${{ matrix.config.os }} | ||
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| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | ||
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| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| config: | ||
| - {os: macOS-latest, r: 'release'} | ||
| - {os: windows-latest, r: 'release'} | ||
| # Use older ubuntu to maximise backward compatibility | ||
| - {os: ubuntu-18.04, r: 'devel', http-user-agent: 'release'} | ||
| - {os: ubuntu-18.04, r: 'release'} | ||
| - {os: ubuntu-18.04, r: 'oldrel-1'} | ||
| - {os: ubuntu-18.04, r: 'oldrel-2'} | ||
| - {os: ubuntu-18.04, r: 'oldrel-3'} | ||
| # - {os: ubuntu-18.04, r: 'oldrel-4'} # don't run R v3.4 | ||
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| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| R_KEEP_PKG_SOURCE: yes | ||
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| steps: | ||
| - uses: actions/checkout@v2 | ||
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| - uses: r-lib/actions/setup-pandoc@v1 | ||
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| - uses: r-lib/actions/setup-r@v1 | ||
| with: | ||
| r-version: ${{ matrix.config.r }} | ||
| http-user-agent: ${{ matrix.config.http-user-agent }} | ||
| use-public-rspm: true | ||
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| - uses: r-lib/actions/setup-r-dependencies@v1 | ||
| with: | ||
| extra-packages: rcmdcheck | ||
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| - uses: r-lib/actions/check-r-package@v1 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,35 @@ | ||
| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | ||
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
| on: | ||
| push: | ||
| branches: [main, master] | ||
| release: | ||
| types: [published] | ||
| workflow_dispatch: | ||
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| name: pkgdown | ||
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| jobs: | ||
| pkgdown: | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
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| - uses: r-lib/actions/setup-pandoc@v1 | ||
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| - uses: r-lib/actions/setup-r@v1 | ||
| with: | ||
| use-public-rspm: true | ||
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| - uses: r-lib/actions/setup-r-dependencies@v1 | ||
| with: | ||
| extra-packages: pkgdown | ||
| needs: website | ||
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| - name: Deploy package | ||
| run: | | ||
| git config --local user.name "$GITHUB_ACTOR" | ||
| git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com" | ||
| Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,75 @@ | ||
| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | ||
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
| on: | ||
| issue_comment: | ||
| types: [created] | ||
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| name: Commands | ||
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| jobs: | ||
| document: | ||
| if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER') && startsWith(github.event.comment.body, '/document') }} | ||
| name: document | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
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| - uses: r-lib/actions/pr-fetch@v1 | ||
| with: | ||
| repo-token: ${{ secrets.GITHUB_TOKEN }} | ||
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| - uses: r-lib/actions/setup-r@v1 | ||
| with: | ||
| use-public-rspm: true | ||
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| - uses: r-lib/actions/setup-r-dependencies@v1 | ||
| with: | ||
| extra-packages: roxygen2 | ||
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| - name: Document | ||
| run: Rscript -e 'roxygen2::roxygenise()' | ||
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| - name: commit | ||
| run: | | ||
| git config --local user.name "$GITHUB_ACTOR" | ||
| git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com" | ||
| git add man/\* NAMESPACE | ||
| git commit -m 'Document' | ||
| - uses: r-lib/actions/pr-push@v1 | ||
| with: | ||
| repo-token: ${{ secrets.GITHUB_TOKEN }} | ||
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| style: | ||
| if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER') && startsWith(github.event.comment.body, '/style') }} | ||
| name: style | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
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| - uses: r-lib/actions/pr-fetch@v1 | ||
| with: | ||
| repo-token: ${{ secrets.GITHUB_TOKEN }} | ||
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| - uses: r-lib/actions/setup-r@v1 | ||
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| - name: Install dependencies | ||
| run: Rscript -e 'install.packages("styler")' | ||
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| - name: Style | ||
| run: Rscript -e 'styler::style_pkg()' | ||
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| - name: commit | ||
| run: | | ||
| git config --local user.name "$GITHUB_ACTOR" | ||
| git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com" | ||
| git add \*.R | ||
| git commit -m 'Style' | ||
| - uses: r-lib/actions/pr-push@v1 | ||
| with: | ||
| repo-token: ${{ secrets.GITHUB_TOKEN }} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,48 +1,30 @@ | ||
| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | ||
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
| on: | ||
| push: | ||
| branches: | ||
| - main | ||
| - develop | ||
| branches: [main, master, develop] | ||
| pull_request: | ||
| branches: | ||
| - main | ||
| branches: [main, master, develop] | ||
|
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| name: test-coverage | ||
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| jobs: | ||
| test-coverage: | ||
| runs-on: macOS-latest | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
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| steps: | ||
| - uses: actions/checkout@v2 | ||
|
|
||
| - uses: r-lib/actions/setup-r@v1 | ||
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| - uses: r-lib/actions/setup-pandoc@v1 | ||
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| - name: Query dependencies | ||
| run: | | ||
| install.packages('remotes') | ||
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | ||
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | ||
| shell: Rscript {0} | ||
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| - name: Cache R packages | ||
| uses: actions/cache@v2 | ||
| with: | ||
| path: ${{ env.R_LIBS_USER }} | ||
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | ||
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | ||
| use-public-rspm: true | ||
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| - name: Install dependencies | ||
| run: | | ||
| install.packages(c("remotes")) | ||
| remotes::install_deps(dependencies = TRUE) | ||
| install.packages("vdiffr") | ||
| remotes::install_cran("covr") | ||
| shell: Rscript {0} | ||
| - uses: r-lib/actions/setup-r-dependencies@v1 | ||
| with: | ||
| extra-packages: covr | ||
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| - name: Test coverage | ||
| run: covr::codecov(coverage = covr::package_coverage(type = "none", code = "tools::testInstalledPackage(pkg = 'visR', types = c('tests'))")) | ||
| run: covr::codecov() | ||
| shell: Rscript {0} |
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