Use local copy of gwascatalog.txt

openSNP · Feb 14, 2024 · f1be677 · f1be677
1 parent ec8691e
commit f1be677
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/app/workers/genome_gov.rb b/app/workers/genome_gov.rb
@@ -10,7 +10,7 @@ class GenomeGov
   def perform
     @known_snps = Snp.pluck(:name).to_set
 
-    gwas_catalog  = open('http://www.genome.gov/admin/gwascatalog.txt') do |f|
+    gwas_catalog  = File.open(Rails.root.join('lib/gwascatalog.txt')) do |f|
       f.readlines
     end
     gwas_catalog.shift # remove CSV header

diff --git a/test/unit/genome_gov_test.rb b/test/unit/genome_gov_test.rb
@@ -15,7 +15,7 @@ class GenomeGovTest < ActiveSupport::TestCase
     paper = GenomeGovPaper.last
     assert paper.snps.include?(@snp)
     assert_equal 2.0e-50, paper.pvalue
-    assert_equal 'pvalue description test', paper.pvalue_description
+    assert_equal '', paper.pvalue_description
     assert_equal '[3.33-5.00] ', paper.confidence_interval
     assert_equal 'http://www.ncbi.nlm.nih.gov/pubmed/23740775', paper.pubmed_link
     assert_equal 'Xie G', paper.first_author