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1. cooler cooler Public

   A cool place to store your Hi-C

   Python 201 50

2. cooltools cooltools Public

   The tools for your .cool's

   Jupyter Notebook 132 50

3. pairtools pairtools Public

   Extract 3D contacts (.pairs) from sequencing alignments

   Python 97 32

4. bioframe bioframe Public

   Genomic interval operations on Pandas DataFrames

   Python 170 28

5. distiller-nf distiller-nf Public

   A modular Hi-C mapping pipeline

   Groovy 85 24

6. polychrom polychrom Public

   Chromosome polymer simulations and in silico capture experiments

   Python 46 16