robot export not handling oboInOwl:created_by

[turbomam]

When I run the following command

robot export \
--prefix "oboInOwl: http://www.geneontology.org/formats/oboInOwl#" \
--input src/envo/envo-edit.owl \
--header "ID|LABEL|definition|oboInOwl:creation_date|oboInOwl:created_by|SubClass Of"

I get a column for oboInOwl:creation_date with values and an empty oboInOwl:created_by column

oboInOwl:created_by annotations are present:

grep created_by src/envo/envo-edit.owl | wc -l

752

but they take a variety of object types

• AnnotationAssertion(http://www.geneontology.org/formats/oboInOwl#created_by http://purl.obolibrary.org/obo/ENVO_03600022 <0000-0002-6670-9157>)
• AnnotationAssertion(http://www.geneontology.org/formats/oboInOwl#created_by http://purl.obolibrary.org/obo/ENVO_08000002 "TermGenie"^^xsd:string)
• AnnotationAssertion(http://www.geneontology.org/formats/oboInOwl#created_by http://purl.obolibrary.org/obo/ENVO_2000000 "cjm"^^xsd:string)
• AnnotationAssertion(http://www.geneontology.org/formats/oboInOwl#created_by http://purl.obolibrary.org/obo/ENVO_01001569 http://orcid.org/0000-0002-4366-3088)

NB @cmungall

[beckyjackson]

Hi @turbomam - this should be resolved by #850 now. If you can build the ROBOT JAR from master, you should be able to get your exports 😄

By the way, oboInOwl is a built-in prefix in ROBOT, so you don't need to define it with --prefix

[turbomam]

Sorry, I haven't had time to check this myself yet, but I trust that it works! I'll eventually speak up either way.

Thanks for the predefined prefixes reminder