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Merge pull request #691 from ontodev/add_validate_operation
Add validate operation
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,14 @@ | ||
| exposure process reported,exposure material reported,exposure material id,disease reported,disease ontology id,disease stage reported | ||
| is-required; subclass-of 'exposure process';,subclass-of|equivalent-to 'material entity'; equivalent-to %3; is-required (when %1 subclass-of ('administering substance in vivo' or 'exposure to substance without evidence for disease' or 'occurrence of infectious disease' or 'occurrence of allergic disease')); is-excluded (when %1 equivalent-to 'occurrence of disease'); is-excluded (when %1 subclass-of ('occurrence of autoimmune disease' or 'occurrence of cancer' or 'no exposure' or unknown)),equivalent-to %2,subclass-of disease; subclass-of 'has material basis in' some %2 (when %1 not-subclass-of ('occurrence of autoimmune disease' or 'occurrence of cancer')); equivalent-to %5; is-required (when %1 subclass-of 'occurrence of disease'); is-excluded (when %1 equivalent-to 'administering substance in vivo'); is-excluded (when %1 subclass-of (vaccination or 'transplant or transfusion' or 'exposure to substance without evidence for disease' or 'no exposure' or unknown)),equivalent-to %4,subclass-of 'disease stage'; is-required (when %1 subclass-of 'occurrence of disease'); is-excluded (when %1 not-subclass-of 'occurrence of disease') | ||
| unknown,,,,, | ||
| administering substance in vivo,Hepacivirus C,NCBITaxon:11103,,, | ||
| exposure to substance without evidence for disease,Dengue virus,NCBITaxon:12637,,, | ||
| occurrence of disease,,,,, | ||
| occurrence of infectious disease,Dengue virus,NCBITaxon:12637,dengue hemorrhagic fever,DOID:12206,Acute/Recent onset | ||
| occurrence of infectious disease,Dengue virus,NCBITaxon:12637,,,Acute/Recent onset | ||
| occurrence of infectious disease,Dengue virus,NCBITaxon:12637,dengue hemorrhagic fever,DOID:12206, | ||
| occurrence of infectious disease,Dengue virus,NCBITaxon:11060,dengue hemorrhagic fever,DOID:12206,Acute/Recent onset | ||
| occurrence of infectious disease,Dengue virus,NCBITaxon:12637,Dengue virus 2,NCBITaxon:11060,Acute/Recent onset | ||
| ('administering substance in vivo' or 'exposure to substance without evidence for disease'),blood or 'Hepacivirus C',UBERON:0000178,,,Chronic | ||
| occurrence of infectious disease,Dengue virus,NCBITaxon:12637,dengue hemorrhagic fever|wheat allergy,DOID:12206|DOID:3660,Acute/Recent onset | ||
| occurrence of infectious disease,Dengue virus,NCBITaxon:12637,dengue hemorrhagic fever|dengue hemorrhagic fever,DOID:12206|DOID:12206,Acute/Recent onset |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,130 @@ | ||
| <head> | ||
| <link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/css/bootstrap.min.css"> | ||
| <script src="https://code.jquery.com/jquery-3.5.1.slim.min.js"></script> | ||
| <script src="https://cdn.jsdelivr.net/npm/popper.js@1.16.0/dist/umd/popper.min.js"></script> | ||
| <script src="https://stackpath.bootstrapcdn.com/bootstrap/4.5.0/js/bootstrap.min.js"></script> | ||
| </head> | ||
| <body> | ||
| <table class="table table-bordered table-striped"> | ||
| <thead class="bg-dark text-white header-row"> | ||
| <tr> | ||
| <th>exposure process reported</th> | ||
| <th>exposure material reported</th> | ||
| <th>exposure material id</th> | ||
| <th>disease reported</th> | ||
| <th>disease ontology id</th> | ||
| <th>disease stage reported</th> | ||
| </tr> | ||
| </thead> | ||
| <thead class="bg-secondary text-white"> | ||
| <tr> | ||
| <th>is-required; subclass-of 'exposure process';</th> | ||
| <th>subclass-of|equivalent-to 'material entity'; equivalent-to %3; is-required (when %1 subclass-of ('administering substance in vivo' or 'exposure to substance without evidence for disease' or 'occurrence of infectious disease' or 'occurrence of allergic disease')); is-excluded (when %1 equivalent-to 'occurrence of disease'); is-excluded (when %1 subclass-of ('occurrence of autoimmune disease' or 'occurrence of cancer' or 'no exposure' or unknown))</th> | ||
| <th>equivalent-to %2</th> | ||
| <th>subclass-of disease; subclass-of 'has material basis in' some %2 (when %1 not-subclass-of ('occurrence of autoimmune disease' or 'occurrence of cancer')); equivalent-to %5; is-required (when %1 subclass-of 'occurrence of disease'); is-excluded (when %1 equivalent-to 'administering substance in vivo'); is-excluded (when %1 subclass-of (vaccination or 'transplant or transfusion' or 'exposure to substance without evidence for disease' or 'no exposure' or unknown))</th> | ||
| <th>equivalent-to %4</th> | ||
| <th>subclass-of 'disease stage'; is-required (when %1 subclass-of 'occurrence of disease'); is-excluded (when %1 not-subclass-of 'occurrence of disease')</th> | ||
| </tr> | ||
| </thead> | ||
| <tr> | ||
| <td class="bg-light"><a href="ONTIE:0003310">unknown</a></td> | ||
| <td class="bg-light"></td> | ||
| <td class="bg-light"></td> | ||
| <td class="bg-light"></td> | ||
| <td class="bg-light"></td> | ||
| <td class="bg-light"></td> | ||
| </tr> | ||
| <tr> | ||
| <td class="bg-light"><a href="ONTIE:0003314">administering substance in vivo</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/NCBITaxon_11103">Hepacivirus C</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/NCBITaxon_11103">NCBITaxon:11103</a></td> | ||
| <td class="bg-light"></td> | ||
| <td class="bg-light"></td> | ||
| <td class="bg-light"></td> | ||
| </tr> | ||
| <tr> | ||
| <td class="bg-light"><a href="ONTIE:0003305">exposure to substance without evidence for disease</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/NCBITaxon_12637">Dengue virus</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/NCBITaxon_12637">NCBITaxon:12637</a></td> | ||
| <td class="bg-light"></td> | ||
| <td class="bg-light"></td> | ||
| <td class="bg-light"></td> | ||
| </tr> | ||
| <tr> | ||
| <td class="bg-light"><a href="ONTIE:0003322">occurrence of disease</a></td> | ||
| <td class="bg-light"></td> | ||
| <td class="bg-light"></td> | ||
| <td class="bg-light"></td> | ||
| <td class="bg-light"></td> | ||
| <td class="bg-light"></td> | ||
| </tr> | ||
| <tr> | ||
| <td class="bg-light"><a href="ONTIE:0003317">occurrence of infectious disease</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/NCBITaxon_12637">Dengue virus</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/NCBITaxon_12637">NCBITaxon:12637</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/DOID_12206">dengue hemorrhagic fever</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/DOID_12206">DOID:12206</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/OGMS_0000094">Acute/Recent onset</a></td> | ||
| </tr> | ||
| <tr> | ||
| <td class="bg-light"><a href="ONTIE:0003317">occurrence of infectious disease</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/NCBITaxon_12637">Dengue virus</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/NCBITaxon_12637">NCBITaxon:12637</a></td> | ||
| <td class="bg-danger" data-toggle="tooltip" data-placement="right" title="Cell is empty but rule: "is-required true" does not allow this."></td> | ||
| <td class="bg-light"></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/OGMS_0000094">Acute/Recent onset</a></td> | ||
| </tr> | ||
| <tr> | ||
| <td class="bg-light"><a href="ONTIE:0003317">occurrence of infectious disease</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/NCBITaxon_12637">Dengue virus</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/NCBITaxon_12637">NCBITaxon:12637</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/DOID_12206">dengue hemorrhagic fever</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/DOID_12206">DOID:12206</a></td> | ||
| <td class="bg-danger" data-toggle="tooltip" data-placement="right" title="Cell is empty but rule: "is-required true" does not allow this."></td> | ||
| </tr> | ||
| <tr> | ||
| <td class="bg-light"><a href="ONTIE:0003317">occurrence of infectious disease</a></td> | ||
| <td class="bg-danger" data-toggle="tooltip" data-placement="right" title="Validation failed for rule: "Dengue virus equivalent-to (NCBITaxon:11060)"."><a href="http://purl.obolibrary.org/obo/NCBITaxon_12637">Dengue virus</a></td> | ||
| <td class="bg-danger" data-toggle="tooltip" data-placement="right" title="Validation failed for rule: "NCBITaxon:11060 equivalent-to 'Dengue virus'"."><a href="http://purl.obolibrary.org/obo/NCBITaxon_11060">NCBITaxon:11060</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/DOID_12206">dengue hemorrhagic fever</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/DOID_12206">DOID:12206</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/OGMS_0000094">Acute/Recent onset</a></td> | ||
| </tr> | ||
| <tr> | ||
| <td class="bg-light"><a href="ONTIE:0003317">occurrence of infectious disease</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/NCBITaxon_12637">Dengue virus</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/NCBITaxon_12637">NCBITaxon:12637</a></td> | ||
| <td class="bg-danger" data-toggle="tooltip" data-placement="right" title="Validation failed for rule: "Dengue virus 2 subclass-of disease".; Validation failed for rule: "Dengue virus 2 subclass-of 'has material basis in' some 'Dengue virus'"."><a href="http://purl.obolibrary.org/obo/NCBITaxon_11060">Dengue virus 2</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/NCBITaxon_11060">NCBITaxon:11060</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/OGMS_0000094">Acute/Recent onset</a></td> | ||
| </tr> | ||
| <tr> | ||
| <td class="bg-light"><a href="ONTIE:0003305">'exposure to substance without evidence for disease'</a> or <a href="ONTIE:0003314">'administering substance in vivo'</a></td> | ||
| <td class="bg-danger" data-toggle="tooltip" data-placement="right" title="Validation failed for rule: "blood or 'Hepacivirus C' equivalent-to (UBERON:0000178)"."><a href="http://purl.obolibrary.org/obo/NCBITaxon_11103">'Hepacivirus C'</a> or <a href="http://purl.obolibrary.org/obo/UBERON_0000178">blood</a></td> | ||
| <td class="bg-danger" data-toggle="tooltip" data-placement="right" title="Validation failed for rule: "UBERON:0000178 equivalent-to (blood or 'Hepacivirus C')"."><a href="http://purl.obolibrary.org/obo/UBERON_0000178">UBERON:0000178</a></td> | ||
| <td class="bg-light"></td> | ||
| <td class="bg-light"></td> | ||
| <td class="bg-danger" data-toggle="tooltip" data-placement="right" title="Cell is non-empty ("Chronic") but rule: "is-excluded true" does not allow this."><a href="http://purl.obolibrary.org/obo/OGMS_000094">Chronic</a></td> | ||
| </tr> | ||
| <tr> | ||
| <td class="bg-light"><a href="ONTIE:0003317">occurrence of infectious disease</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/NCBITaxon_12637">Dengue virus</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/NCBITaxon_12637">NCBITaxon:12637</a></td> | ||
| <td class="bg-danger" data-toggle="tooltip" data-placement="right" title="Validation failed for rule: "wheat allergy equivalent-to (DOID:12206)".; Validation failed for rule: "dengue hemorrhagic fever equivalent-to (DOID:3660)".; Validation failed for rule: "wheat allergy subclass-of 'has material basis in' some 'Dengue virus'"."><a href="http://purl.obolibrary.org/obo/DOID_12206">dengue hemorrhagic fever</a>|<a href="http://purl.obolibrary.org/obo/DOID_3660">wheat allergy</a></td> | ||
| <td class="bg-danger" data-toggle="tooltip" data-placement="right" title="Validation failed for rule: "DOID:3660 equivalent-to 'dengue hemorrhagic fever'".; Validation failed for rule: "DOID:12206 equivalent-to 'wheat allergy'"."><a href="http://purl.obolibrary.org/obo/DOID_12206">DOID:12206</a>|<a href="http://purl.obolibrary.org/obo/DOID_3660">DOID:3660</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/OGMS_0000094">Acute/Recent onset</a></td> | ||
| </tr> | ||
| <tr> | ||
| <td class="bg-light"><a href="ONTIE:0003317">occurrence of infectious disease</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/NCBITaxon_12637">Dengue virus</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/NCBITaxon_12637">NCBITaxon:12637</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/DOID_12206">dengue hemorrhagic fever</a>|<a href="http://purl.obolibrary.org/obo/DOID_12206">dengue hemorrhagic fever</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/DOID_12206">DOID:12206</a>|<a href="http://purl.obolibrary.org/obo/DOID_12206">DOID:12206</a></td> | ||
| <td class="bg-light"><a href="http://purl.obolibrary.org/obo/OGMS_0000094">Acute/Recent onset</a></td> | ||
| </tr> | ||
| </table> | ||
| </body> | ||
| <script> | ||
| $(function () { | ||
| $('[data-toggle="tooltip"]').tooltip() | ||
| })</script> |
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