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Merge pull request #533 from balhoff/issue-518
Some refactoring of ReasonOperation.
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31 changes: 31 additions & 0 deletions
31
...main/java/org/obolibrary/robot/reason/InferredClassAssertionAxiomGeneratorDirectOnly.java
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,31 @@ | ||
| package org.obolibrary.robot.reason; | ||
|
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| import java.util.Set; | ||
| import javax.annotation.Nonnull; | ||
| import org.semanticweb.owlapi.model.OWLClass; | ||
| import org.semanticweb.owlapi.model.OWLClassAssertionAxiom; | ||
| import org.semanticweb.owlapi.model.OWLDataFactory; | ||
| import org.semanticweb.owlapi.model.OWLNamedIndividual; | ||
| import org.semanticweb.owlapi.reasoner.OWLReasoner; | ||
| import org.semanticweb.owlapi.util.InferredIndividualAxiomGenerator; | ||
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| /** An InferredAxiomGenerator which returns only direct class assettion axioms. */ | ||
| public class InferredClassAssertionAxiomGeneratorDirectOnly | ||
| extends InferredIndividualAxiomGenerator<OWLClassAssertionAxiom> { | ||
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| @Override | ||
| protected void addAxioms( | ||
| @Nonnull OWLNamedIndividual entity, | ||
| @Nonnull OWLReasoner reasoner, | ||
| @Nonnull OWLDataFactory dataFactory, | ||
| @Nonnull Set<OWLClassAssertionAxiom> result) { | ||
| for (OWLClass type : reasoner.getTypes(entity, true).getFlattened()) { | ||
| result.add(dataFactory.getOWLClassAssertionAxiom(type, entity)); | ||
| } | ||
| } | ||
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| @Override | ||
| public String getLabel() { | ||
| return "Class assertions (individual direct types)"; | ||
| } | ||
| } |
34 changes: 34 additions & 0 deletions
34
...ain/java/org/obolibrary/robot/reason/InferredSubClassAxiomGeneratorIncludingIndirect.java
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,34 @@ | ||
| package org.obolibrary.robot.reason; | ||
|
|
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| import java.util.Set; | ||
| import javax.annotation.Nonnull; | ||
| import org.semanticweb.owlapi.model.OWLClass; | ||
| import org.semanticweb.owlapi.model.OWLDataFactory; | ||
| import org.semanticweb.owlapi.model.OWLSubClassOfAxiom; | ||
| import org.semanticweb.owlapi.reasoner.OWLReasoner; | ||
| import org.semanticweb.owlapi.util.InferredClassAxiomGenerator; | ||
|
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| /** An InferredAxiomGenerator which returns both direct and indirect inferred subclass axioms. */ | ||
| public class InferredSubClassAxiomGeneratorIncludingIndirect | ||
| extends InferredClassAxiomGenerator<OWLSubClassOfAxiom> { | ||
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| @Override | ||
| protected void addAxioms( | ||
| @Nonnull OWLClass entity, | ||
| @Nonnull OWLReasoner reasoner, | ||
| @Nonnull OWLDataFactory dataFactory, | ||
| @Nonnull Set<OWLSubClassOfAxiom> result) { | ||
| if (reasoner.isSatisfiable(entity)) { | ||
| for (OWLClass superclass : reasoner.getSuperClasses(entity, false).getFlattened()) { | ||
| result.add(dataFactory.getOWLSubClassOfAxiom(entity, superclass)); | ||
| } | ||
| } else { | ||
| result.add(dataFactory.getOWLSubClassOfAxiom(entity, dataFactory.getOWLNothing())); | ||
| } | ||
| } | ||
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| @Override | ||
| public String getLabel() { | ||
| return "Subclasses including indirect"; | ||
| } | ||
| } |
36 changes: 36 additions & 0 deletions
36
...org/obolibrary/robot/reason/InferredSubObjectPropertyAxiomGeneratorIncludingIndirect.java
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,36 @@ | ||
| package org.obolibrary.robot.reason; | ||
|
|
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| import java.util.Set; | ||
| import javax.annotation.Nonnull; | ||
| import org.semanticweb.owlapi.model.OWLDataFactory; | ||
| import org.semanticweb.owlapi.model.OWLObjectProperty; | ||
| import org.semanticweb.owlapi.model.OWLObjectPropertyExpression; | ||
| import org.semanticweb.owlapi.model.OWLSubObjectPropertyOfAxiom; | ||
| import org.semanticweb.owlapi.reasoner.OWLReasoner; | ||
| import org.semanticweb.owlapi.util.InferredObjectPropertyAxiomGenerator; | ||
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| /** | ||
| * An InferredAxiomGenerator which returns both direct and indirect inferred subobjectproperty | ||
| * axioms. | ||
| */ | ||
| public class InferredSubObjectPropertyAxiomGeneratorIncludingIndirect | ||
| extends InferredObjectPropertyAxiomGenerator<OWLSubObjectPropertyOfAxiom> { | ||
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| @Override | ||
| protected void addAxioms( | ||
| @Nonnull OWLObjectProperty entity, | ||
| @Nonnull OWLReasoner reasoner, | ||
| @Nonnull OWLDataFactory dataFactory, | ||
| @Nonnull Set<OWLSubObjectPropertyOfAxiom> result, | ||
| @Nonnull Set<OWLObjectPropertyExpression> nonSimpleProperties) { | ||
| for (OWLObjectPropertyExpression prop : | ||
| reasoner.getSuperObjectProperties(entity, false).getFlattened()) { | ||
| result.add(dataFactory.getOWLSubObjectPropertyOfAxiom(entity, prop)); | ||
| } | ||
| } | ||
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| @Override | ||
| public String getLabel() { | ||
| return "Sub object properties including indirect"; | ||
| } | ||
| } |
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